DUPLOdb - Line and FST details
Line specific information
| Line ID | SALK_059398 |
| Line Availability | available from NASC (N559398) and ABRC (SALK_059398) |
| Confirmed for Hit | At1g16160 At4g18950 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g10340
| Sequence (A. th genome BLAST matches underlined) | AAGATGCACTTATCCCCTGTGGTTTATCCCCTCTGCATCTTGCGGTCCTCCAAGGCTCTG ATGTGATCCAGGACGAGGTCTTGGACAAGGTTCAATTGGTCTTTCGCTCGATCACGCCTT GCAAACAGAGCCGTCTTTCCTCTCGCTGCTCGAAACAAAAATATGGATGCCTTTGTTCTT ATGGCAGAGAGCTTGGGAATTAACAGCCAAATTCTTCTACACCAAACCGATGAAAGTGGC AACACTGTCTTACATATTGCTGCATCCGTCTCTTTTGATGCTCCTGTGAGTAGTTTTCTG TGACGCTCTCTCCTTTAAATTTTTAGTTACAAAATTTGACTTCCCATGGACTCTATGTTA AGATTACATTACTAAAAGATGGCACATATTCTATTTATTAGTGGGGTGTCTTCTCATAAT TC |
| GenBank Accession | CC054383 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3391800 - go to primer design |
| BLAST e Value | 1e-164 |
| Hit Clone Code (BAC ID) | F14N23 |
| Hit Gene Code | At1g10340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ankyrin repeat family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At1g16160
| Sequence (A. th genome BLAST matches underlined) | >29-K117581-SALK_059398C-LBb3 ATTTTGGCCCTATTTGGAACATCAAGATCGGTAACCATTGATCAAACTCACCTGACAACA ATGGTTGCAGGAACTTTTGGGTACATGGATCCAGAGTACTTCCTATCAAGCCAATATACT GACAAGAGCGATGTTTATAGTTTCGGGGTTGTCCTGGTAGAGCTCATAACTGGAGAAAAA CCGTTGTCCCGAATTCGTTCTGAGGAAGGAAGGGGGTTGGCAACTCATTTCCTCGAGGCC ATGAAAGAAAACAGAGTGATTGACATCATTGATATTCGGATCAAAGAAGAAAGCAAGCTT GACCAACTGATGGCAGTGGCGAAACTCGCTCGAAAGTGTCTTAGCCGGAAAGGGATTAAA GA |
| GenBank Accession | queueing for submission to ENA/GenBank |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5537797 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T24D18 |
| Hit Gene Code | At1g16160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | wall associated kinase-like 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g18950
| Sequence (A. th genome BLAST matches underlined) | AAGAACCAGCTTTTGTTGAGCGCGTGTTTGTCACGTTATTTTATGCGCGTATCTGGACGT CATATCTGGCGCCTCGGTTCCTTGCCTTCACGACTGGATAGGTCTCAACTCGTACCCGTT GATGTACAGTTCCTCAGATGAAGCTTATCTGTGTGGATGAACCCGCACGTGTTTGGATTC CATTCTGTTAAACGACTGCTTTTTACCTGCGCCGACTAGTTTTTCGTGGTCTGTTACCCA CCTGGCTCGTGAATTTTTGAAGTCGTGTCCCATATTAACGACTTTTTATAAAGGGGATGG GATTTATGAGATTACATGACTTCTATTTCGGTTTGAATT |
| GenBank Accession | ED591079 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:10375362 - go to primer design |
| BLAST e Value | 4e-60 |
| Hit Clone Code (BAC ID) | F13C5 |
| Hit Gene Code | At4g18950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Integrin-linked protein kinase family |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on Thursday, 10 June 2021 13:37 |
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