DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_067859c
Line Availability available from NASC (N657959) and ABRC (SALK_067859c)
Confirmed for Hit At3g23790
Parent of DUPLO pair 1533
Parent of pair(s) none

Gene hit At3g18260

 
Sequence (A. th genome BLAST matches underlined) 
ATCGGGACATATTTCAACTTTGTGAATCTTCTCTTCATAGGTAAGAAGAATTAAGTCATG
ATACTCAACTATATATGTAGATTTAATTCCCTTTTATTAA
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At3g18260
Predicted Position of Insertion Chr3:6260629 - go to primer design
BLAST e Value 1e-50
Hit Clone Code (BAC ID) MIE15
Hit Gene Code At3g18260 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Reticulon family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g23790

 
Sequence (A. th genome BLAST matches underlined) 
TCTTAGAACGCTTATCATTGCCAAGGGAGGCTGCTTTGAGCTCTAATGAATGGAAGTCTG
TTCCTGATATTTGGAGATCATCTGTGGAGAAGTACGGTGACAGAGTTGCGGTGGTAGATC
CGTATCATGACCCGCCTTCTACATTCACGTACAGACAGGTAACACTACTTCGCATCTCAT
TGCTATTATTTTAGATCCCCACACTTTTGAAATAGAGGTTTTTAAAGCAAATGACAGAAC
TTAGGGAAAAAACTGAAGTTTAAGAGTTAAGATTGATTGGCCATCAGCTTTTTTTCTTTA
TCGATTAGTTTTGTATCTACATATCTTAACTGCTTGTCAATAAGAAGGTAGCTAGAGGGT
GCTGAAGATGAACCATATTCGAATGTTAGGAAGCATACTAAATTGATATTTCCTTATG
GenBank Accession BH911353 [GenBank]
Graphic View Graphic view of gene At3g23790
Predicted Position of Insertion Chr3:8575767 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MYM9
Hit Gene Code At3g23790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation AMP-dependent synthetase and ligase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37