DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_074025c
Line Availability available from NASC (N671537) and ABRC (SALK_074025c)
Confirmed for Hit At1g10340
Parent of DUPLO pair 2506
Parent of pair(s) none

Gene hit At1g10340

 
Sequence (A. th genome BLAST matches underlined) 
TAGATGCTGCCCCACTCATCGCGGAAAAGACACAATCGATTGGCCTCGGTGAACTCATTC
TCGCCATATCGAGTGGATCCACTAGTAAGTTTTTCTAGTGCGCGCTCAACATTTTTCGTA
ATCTTGTGTAAAAATCACTAGCTCACTACTACTGTGTTTGGATCCTTGAGCAGGTATCGT
AGGGACTATACTGGAGAGATTCCCAGACCTAGCTAGGGAAGAAGCT
GenBank Accession CC179922 [GenBank]
Graphic View Graphic view of gene At1g10340
Predicted Position of Insertion Chr1:3392129 - go to primer design
BLAST e Value 1e-113
Hit Clone Code (BAC ID) F14N23
Hit Gene Code At1g10340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ankyrin repeat family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g29010

 
Sequence (A. th genome BLAST matches underlined) 
CCGAGAATTGGAGCCGGCGGCCAGTCTACCAATGTTCTGTATTACAGCTGTGAAAGCCTC
TAGCTTGACCAGAAGCTGCAGCCCGGGCCCGTCGACCAAAANTATGNNCNCAAGGTGTTC
TATGTAATGCCNCAAAGAGAATGTGTTTTATAAAGATCGATAGTTATTAGATTTATGAAT
AGATTGATACCCAGTTTAGGAATCAAGCATATATGATTAGAGAATTAATTATCTGATTAG
TTTTTATCTTAAACACACGAAAACACTTTGTGCATGGAAAGTGTTCGATTAAATACCACA
AAGAGACATGGTTTAATGAAGTATTAACATTAGATTAAAGAATGAATGTCATTACAAAAC
TTTTTGGTTCAATAAAAGCTAGTCTCCATGAATTTAACCAACTCGTTAAAATCGATTTTT
CCATCTTTGTTCCCATCTAATGACCTAATCATTAT
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At3g29010
Predicted Position of Insertion Chr3:11006708 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K5K13
Hit Gene Code At3g29010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Biotin/lipoate A/B protein ligase family
Insertion Classification TS2TE (5')
Confirmation Status failed


Last Updated on Thursday, 10 June 2021 13:37