SimpleSearch - Line and FST details


Line specific information

 
Line ID 011E08
Vector Used pAC106
Line Availability available as T3 set from NASC (N401016)
Segregation Analysis 100:92:68
Confirmed for Hit At5g66710
Parent of DUPLO pair none
Parent of pair(s) 2242, 2692, 97316
Note

Gene hit At2g46510

 
Sequence (A. th genome BLAST matches underlined) 
>61-K012433-022-011-E08-8409
NTTTGATACCATGTAGATTTCCCGGACTGAAGCACTTACATTGAATTATCCTGAAATTCA
TTGGATTTTCTAAAGGTAGGAAAATTTGCCCAAGATACAAATATGTGACATCGTGGGCTA
AATAAAGTAATGAGTTACTTAAGCCGGATTGCTTTCCTATAAGCAAAGAGAAAAGAAAAG
AGGCTTTTATCTATTTCTATGGGATCCTCCCTATAGTGAGTCGTTNTACTACAGANNNCN
NNNNGGGAGGNTTCCCANNTGTTTCTACCTTCGACAAAGAAAGGGTCCGCGGCGAGAGTA
CCATGAGTAAGATCATTAGGAAGATTCGACAGAGGGCGATCCGAATGAGTTATCTGTGAA
GenBank Accession CT025962 [GenBank]
Graphic View Graphic view of gene At2g46510
Predicted Position of Insertion Chr2:19090978 - go to primer design
BLAST e Value 7e-15
Hit Clone Code (BAC ID) F11C10
Hit Gene Code At2g46510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ABA-inducible BHLH-type transcription factor
Insertion Classification TS2TE (3')
Confirmation Status failed, line belongs to a contamination group, please check line 013E08
Other FSTs Supporting this Hit CT025961 [GenBank] CT025962 [GenBank]

Gene hit At5g66710

 
Sequence (A. th genome BLAST matches underlined) 
>61-K013044-022-011-E08-35St
NTGACGTAAGGGGATGACGCACAATCCCACTATCCTTCGCAAGACCCTTCCTCTATACTG
ATTTTTGGAATTTGGATATGGGTTAAAGAACATTTCTTTATCCATGATTATAGGTTCAGG
AGAGTTGTCCCTGTGTCTGTGAAGATATTCCAGCCTAAAAGAACATCTGCTTTAAGCATT
GAGCAGAGGAAGAAGTTTCAGAGAGAGGTTTTGCTGCTTTCCAAGTTTAGACATGAAAAC
ATTGTGCGGGTAATATTGGAGCCTTTGATGTTTTGTTTGTTTTCATATGTTAGCAGCCTT
ATCTCGTTGGTCGTCGATGGTATAATATCCCTAATGGGATCCTTTTGATGACAGTTCATT
GGGGCGTGCATAGAACCAAAGTTGATGATAATTACTGAACTCATGGAAGGCAATACTCTT
CAGAAGTTTATGTTGAGTGTTCGTCCAAAGCCTCTTGATCTGAAGCTCTCCATTAGCTTT
GCGTTGGATATTGCTCGGGGAATGGAGTTCTTGAATGCAAATGGCATTATTCACCGAGAT
TTGAAACCAAGTAAGTTAAACTGAGACATCACGAAAAGAGGAATCAAGATTTGTGAATTG
AAGAAGATCGGTTTTTGTGCAGGTAATATGCTCTTAACAGGTGATCAGGAACCTGCTAAG
TTGGCTGACTTTGGACTTGCTATGGGATCCTCCCTATAGTGAGTCGT
GenBank Accession CR356248 [GenBank]
Graphic View Graphic view of gene At5g66710
Predicted Position of Insertion Chr5:26637229 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MSN2
Hit Gene Code At5g66710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR356248 [GenBank]


Last Updated on 10.06.2021 13:37