SimpleSearch - Line and FST details


Line specific information

 
Line ID 011H05
Vector Used pAC106
Line Availability available as T3 set from NASC (N401049)
Segregation Analysis 50:50:50
Confirmed for Hit At3g11640 At3g23410
Parent of DUPLO pair none
Parent of pair(s) 3210, 3339

Gene hit At3g11640

 
Sequence (A. th genome BLAST matches underlined) 
>40-K013043-022-011-H05-35St
NTTTTGACGTAAGGGATGACGCTCAATCCCACTATCCTTCGCAAGACCCTTCCTCTATAT
AAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCACAACAGACTGTTACT
ATCTGTATCCTACACATTCAGAGTCGTAATTACTATGGTTTTTTTACAGGTCCTTTAATA
TGACTATGGGATCCTCCCTATAGTGAGTCGANTTACTCA
GenBank Accession AL752327 [GenBank]
Graphic View Graphic view of gene At3g11640
Predicted Position of Insertion Chr3:3674251 - go to primer design
BLAST e Value 0.025
Hit Clone Code (BAC ID) F24K9
Hit Gene Code At3g11640 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL752327 [GenBank]

Gene hit At3g23410

 
Sequence (A. th genome BLAST matches underlined) 
>40-K012433-022-011-H05-8409
TGATCCATGTAGATTTCCCTGACTCGAGTCACTTTCAATTCGCATCTTGTCCTCCATCCT
ATACTGACTGATTCTATGGCACTCCTCCCTATAGTGAGTCGTATTACTCACCTGGGGCAT
GGGCCATACAGTTTATGTTGACTCTACGTGGAAAGTTCTCCTTGCTCTTTGCCTCTTGGG
CACAAATACGAAATGCTGTGTCGTTTATATATCCCCAGCTTAAACTATTTTGCGGTCCTA
TGGGATCCTCCCTATATTGAGTCGTCTTACTCACGAACGCGCCTTTTGACTCTCATAACG
AAAGACCCCTCGCGAAAGGGATAGTGGAGACCATGGAAGAAACAGAGCAGACTCTTCTTG
AATCACTTGCTCATAAAGGCCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACCCC
CGCCGGGATGTCCTGGCCCTCTTTATCCCCGTGTTCTTTCACTTCCCCCCCTCTCAAATA
GCGCTGCGCTCCGCGAACCCTCACAATATCGACTAGCGCTTCTTTCTCTCAAACAGNCTC
CCTCTCATGGGTAAACCGGACCTCAGTACTCTTCCTTGGGGAGCAAATCCTAATCTAACC
TCCCCACCCTATCAAGCCCACACTCTCGTCATAACTTCC
GenBank Accession AL752326 [GenBank]
Graphic View Graphic view of gene At3g23410
Predicted Position of Insertion Chr3:8384113 - go to primer design
BLAST e Value 4e-35
Hit Clone Code (BAC ID) MLM24
Hit Gene Code At3g23410 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation fatty alcohol oxidase 3
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL752325 [GenBank] AL752326 [GenBank]


Last Updated on 10.06.2021 13:37