SimpleSearch - Line and FST details
Line specific information
| Line ID | 052D06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404938) |
| Segregation Analysis | 50:30:28 |
| Confirmed for Hit | At2g46740 At5g55090 |
| Parent of DUPLO pair | 2682 |
| Parent of pair(s) | 4491, 4644, 4704, 10023, 10899 |
Gene hit F17C15
| Sequence (A. th genome BLAST matches underlined) | >44-K012491-022-052-D06-35St AACTGACGAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT CGGTTTAAACTATCAGTGTTTACCATATTAAATTTAATTGATCATTAACACACTGAATCG ACCAGAGCTTACTTCACTACTCTTCCTCTCTGTCTCCATCTACATAACTCTCATCTCCAT CTCTTTCTCTCACTATGGGATCCTCCTATTAGGTGAGNGNNNNNNATACNANNNCGNANN TATATACNCNAACGNGATACTCGCAACTATGGATGAACGAAATATACAGATCGACGTGAT AGGGGCCTCTCTGATTAAACATTGCCAACTG |
| GenBank Accession | AL753706 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:962115 - go to primer design |
| BLAST e Value | 7e-12 |
| Hit Clone Code (BAC ID) | F17C15 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801470 [GenBank] FR801470 [GenBank] |
Gene hit At2g46740
| Sequence (A. th genome BLAST matches underlined) | >44-K012473-022-052-D06-8409 NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACATTTTACTCCACCACCAACCG AGACATCAGGCTACGCGCTATCCAACTTATAACTGACTCAACTGACAGATACCTCAGAGC GGAGCCGATCTGGGACGGAGGGGTTTGGACTTAGCATACGGATTGACACCCGTGGGATAT AAAACTTGGTACTTATGAACGATCCCTTGTATACATCAATGCATTTAACCTTATGGATGC TATGCTAACTATGAGGGGTTACACGCATTTTCCGTCCGGCTTTACTAGCTGCAGCGACGA TAGATACAAGCTCGGCTTCAGTTGTTGGGTAAGCCACGTTGGCGGCTCTACACGTGGAGC GGTCTGGGAAGGCTCCTAATGAGTTGGTGACTATACAGTTCGTGTTTCCTGACACACATT TAACAGGATCTTCGGGTGGTGTTGAGATTACCGTGTGCACAAGTGTAAATAAACAATATA ACCCGAGAAGGGTGCGCCAAAACGAACAATAGGAAGGAGAATAACCAAATGCCATGGTTT TTTATTGAGTTTTGTCTAATGGAGGCGTTTCTAAATGTTTGGTATATATAGTGGGTTGTG GCTTTAAAGGCCGGTTCAGTGATGCATCATGCTA |
| GenBank Accession | AL753704 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:19206979 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F19D11 |
| Hit Gene Code | At2g46740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | D-arabinono-1,4-lactone oxidase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL753704 [GenBank] |
Gene hit At5g55090
| Sequence (A. th genome BLAST matches underlined) | >44-K104556-0022-052-D06-8409 AGAAGATCAGAGACGACGAGGTAAGTGTTAAAAACTTAGAACAGACAAAAGTGACAGAGA GAACAGAACGGAACGGAACGGGGACGGTGGTGTTTTTACTTCTTAAAAGGATTTACATCC GCTCGATTCTCATCTTCTATCTCGAAATCGTTTCTCTATCTCCCCCCTCCCTTTAACTCA CCCTATCGTTTCCCCCTCTGGTTCACCCGAACTCTCCTCTCCGGCGAGTTTCTTGATCCG ATCACCCGGTAAAGAATCGTCATCCCATAAGAAATTTGTAGAATTTGCAAATGGGTCTTC GTGATCCTCTTTAATGAATCTACTTCTCGAAGTTTCACATAAATCCCAAAACCGTTGATC CAACACAATACTATGGGATCCTCCCTATACTGAGACTTATTACTCCTCCCTTTAGTCTGG CTGTGTCGGCCTGCGCCATGGCGTCCCCCCCCTGTATGATAACAGCCGATTACGTTGTGG GGAGGGGTAGGGCGCTAGCTAGTCAGCGGATCACGCCCTATGGGCCCGGGTGGGGAGCGC CGCTGATACGGCACGGCCGCTGTGATCGTGAGCTGCTCATTTTGAGCGCTGCGAAAGCGA GCTTCATCGTCCTGTTGTGATCGACTACGAGCCTCTCGCGTAAGCCGCCCGAGGGCGGGC GGGTGCCTGTCCTCTAGTGAGCCCCGGCTACCTCGGGTCGCTATACGCCGTCGTGTCGAC CGTCCGGCCCTGCACGCGCCGCCCGATGGAGGGCGCCATCCTGTACTCAATGTGCACCGT GAAGACGCGCTAGTTGTATGTCCCTCCAGCTCTTTCTAGGCGCCTTGCACGCAGGTCACC CGCTGTCAGGTGCTTCTCTCTCTCCGGTCAC |
| GenBank Accession | FR801472 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:22357010 - go to primer design |
| BLAST e Value | 2e-90 |
| Hit Clone Code (BAC ID) | MCO15 |
| Hit Gene Code | At5g55090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | mitogen-activated protein kinase kinase kinase 15 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL753705 [GenBank] |
Gene hit At2g46700
| Sequence (A. th genome BLAST matches underlined) | >44-K012429-022-052-D06-8409 NTGATCCATTGTAGATTTCCCGGACATGAANGCCTTTACATTTGAGAATATAAAGAACAG ACACGATCAGGCTCGTGGTAAAAACTTAGAACAGACTAAGTGACCGATACAACAGACCGG AACGGAACGGGGCACGGTGGTGTTTTTACTTATCAAAAGGATTGACAACCGTGGGATTAA AATCTGATACGTCGAAACGTATACTTGTATACCTCACTCTCTTTAACTCGCTCGTATGGG ATCCTCCCTATAGTGACGTCGTACTCCTCAGTCCGGCCGAGTTTCTTGATTCCATCACCC GGGGATGAATCCTCGTCCCCTACCAAATTCGTACCATCCGTGGTGGGTCTCAGCGAGCCT GTTTAGGGAATCGCACTTATCGAAGTGCAGCATTGACCCGAGACCGTTGATGCCGCACAG TTCTATGGGACTCTCCCTGTAGTGAGCAGTATCACTCACTCTACTGTATCGTACCCACTC CATCAGGTAATGGTGCGCTACAACGAACTATCCGAGCGTTATTAACCGGATGCTGCGGTA TATAGTGAGGTTTGACTAATGGAGGCGTCTGTAAATGTTTGG |
| GenBank Accession | FR801469 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:19186570 - go to primer design |
| BLAST e Value | 3e-17 |
| Hit Clone Code (BAC ID) | T3A4 |
| Hit Gene Code | At2g46700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CDPK-related kinase 3 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801468 [GenBank] FR801468 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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