SimpleSearch - Line and FST details
Line specific information
| Line ID | 053G03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405067) |
| Segregation Analysis | 100:100:85 |
| Confirmed for Hit | At3g02840 At1g04180 At5g01840 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 42850, 84578, 84579, 84580, 84581, 84582, 84583, 84584, 84585, 84586 |
Gene hit At3g02840
| Sequence (A. th genome BLAST matches underlined) | >23-K012358-022-053-G03-8409 TTGATCCATGTAGATTNTCCGGCACATGAANGCCTTTACACTTGCTTATCTTATCGTGGT TGGTTCTATGGGATCCTCCCTATAGTGAGTCGNATTACTCAGAGACGGGCTCAATGGATT TTCGGCGATTTCTCCGTCGGGGACACCAAGATTACATTTCAGCTCCGATCGCCATCAAGG ATAGAGCGGATTCAGTCGCCGCGCGTGCTGTCGACGCCGCGTGATGCGGGGGAGATAACG TCGGTGATTGCAAAACTCAGGGATGCTTGATAGAGTATGCCGAGTGTTTGGAGATTGTGA GCAAAATCAAGAACTTGGGAAGAGGAGGGGACACGAACAAGAAGTGTTTGGTCCAAAACG GAAGCGTTTTGGCTTTGTCTTCTTGTTTTGAAAGATTCGCGGCGGCGCGTGATGGACACA TGCGTTTATTGGAGGAAATCTTGTTTGTTCTATCATCTTGGTTGCCTCTGAATCGATCAN AAGGTTTCAACAAGATGGGATCAACGGCTTCTCTTAACTGTCTCGTACGGGTCTTGAACG GGAAAGGACGCTAAAACGAAGCCAAAACGCTGCGTTTTGCATCAGAGAGGTTATTGCAG |
| GenBank Accession | BX890731 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:618475 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F13E7 |
| Hit Gene Code | At3g02840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ARM repeat superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g04180
| Sequence (A. th genome BLAST matches underlined) | >23-K012472-022-053-G03-8409 TTGCTTATCTTATCGTGGTTGGTTCTATGGGATCCTCCCTATAGTGAGCTTAAAAGGCCT GACATCGGCCCATTGGAGCTTAAAAGCATGACAGGATAGACGCCGGTTCTTGACATCGGT GCTCTGGAGAAGATAAAATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAGTTCTCG CGTCACCACGTGGAGCTCGTAGATGGTCAGAAGCTATGGGATCCTCCCTATAGTGACCCN GGNNGCGTGGAGACTCCCCTACATGGTGTGGAACCCTCCACTAAGAGCGGCCACATACAG GATGTGGTCGGTCGACATCGGAATCGATCCGGCTTGAACATATTCTTACGCAAGATCCGC ATAACCACTGTGACTGACACGTGCGACTATCGGAGGATGTCATAGTAGTACTATAATTTG TGATGCCTCTGGAACGAATAATACGTGCTCGCAACATTGCAGTGACGCGCTTTGTTTTAA TGGCTATGTCAGCTTTTGTATAGGGAAGGACCCTAAAACGAGACAAACCGCTTGCGTCCT GCATCCCAGAGGTTATTGC |
| GenBank Accession | AL754210 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:1105503 - go to primer design |
| BLAST e Value | 7e-86 |
| Hit Clone Code (BAC ID) | F20D22 |
| Hit Gene Code | At1g04180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | YUCCA 9 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR801704 [GenBank] |
Gene hit At5g01840
| Sequence (A. th genome BLAST matches underlined) | >23-K012455-022-053-G03-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCATTGTTTGACTGGATATATTGGCGGTTAAACCTAATAGAAAAGAGCGT TTATTATAATAATCGGATATTTAAAAGGGCGTGAAGAGGTTTATCCGTTCGTACATTTGT ATGTGCATGCCAACCACAGGGTTCCCCTCGGGAGTGCTTGGCATTCCGTGCGATAATGAC TTCTGTTCAACCACCCAAACGTCGGAGAGCCTGACGACGGATCAGCATTCCAAAAAGATC CCTTGGCTCGACTGGGTCGGCTATGGGATCCTCCCTATAGCGAGTCATTTCACTAACAAA CACAAAATAATCAACAGAGAGAGTCAGAGAGATAATGGGTAATAACTATCGGTTTAAGCT ATCGGAGTTAATCCCTTACGCTTGGTTTTACAAACTTAGAGACATGTCCAAATCCAAGAA GAAGAATCTTCAGAGCCAACCAAATAGCACCACCTCCAAGAGGAAACACCACGCAGTCCC TACTCCTACGTCCACCACGCCACTCAATCCTATGGGATCCTCCCTATAGTGAGTCGATTT ACT |
| GenBank Accession | FR801705 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:324512 - go to primer design |
| BLAST e Value | 2e-110 |
| Hit Clone Code (BAC ID) | T20L15 |
| Hit Gene Code | At5g01840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ovate family protein 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Other FSTs Supporting this Hit | FR801705 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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