SimpleSearch - Line and FST details
Line specific information
| Line ID | 055G12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405268) |
| Segregation Analysis | 100:97:94 |
| Confirmed for Hit | At1g50325 At3g03920 |
| Parent of DUPLO pair | 998, 11985 |
| Parent of pair(s) | none |
Gene hit At1g50325
| Sequence (A. th genome BLAST matches underlined) | >02-K119971-0022-055-G12C-8409 TCATGAACTCATAGCAAAATGACTCATTGACTGCTCTGCGTGCGCACATGCCACATATTT CATCTGTTGTAACCTTCGTATTAAATCTTGCATATGATGAGACAACAAAAAGAAGTAAAA CTACTATATGAACCAATAAAAAGTTGTTCTTGACATATGCAACCATTTTTGTTTTTCAAT CTTTAAGAACTTATGTGAGATTATTATAGGGTGCAAACATATCTTTAAATTTAAAACTAA CAGATTTTGTTTCATTTTTGCTGTAAATGCTGCAGATTATGTACCATGGAAAAAGATTTG AATTTAAATCCAAAAATATGACTATGATTCTCCTATTTTTGTTTGATTTTTTTCCTCATT GTTTTTTTTATTTTATTTTTGGACAATGTTTGTTTTCATTCCATAATGTAGAAGCCAAAT ACAAAGATAAAGGGAAAAAGTTCCAAAGTTTAAAGCACAACAATAAGGGGCATACTCCAA AAGTTACCAGAAAAATGATAAAAAGATAGATAGGGCTAATCGACAAAGGGTCCTTGAGAG TTTTGAGCCAAAAGCAAAGATGCTTATGGTACTTGTGAGATCAAAGTTTATCGACGACTC TNTCAAGAGCGATTCAAAGGAAAAACAAATTGTCTCTGTCAAAAGACGAAGTGGCGTTAA TGAAGGGGTCAAAGACATGATTCTCGCCGGCACGAGGAGAGCTACATGAAGTAGAGCTTT GACAAAGGTTTGGGTAGTGGTGATGGTGCTCTGGTGCTTGGATTTATTTGCTAGAATTGA TGCCGAAGAAAGTTGAAGTTAGGCAAACAAT |
| GenBank Accession | LN713385 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:18640314 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F14I3 |
| Hit Gene Code | At1g50325 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant invertase/pectin methylesterase inhibitor superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL936430 [GenBank] |
Gene hit At3g03920
| Sequence (A. th genome BLAST matches underlined) | >95-K012470-022-055-G12-8409 NTGATCCATGGTAGATTTCCCGGACATGATAGCACTTACAATTGAATATATTGTCGCGCT AACCTACGAGACGACATCGTATTCTTTGAATAATATGCTAATTAGAAAGGAGTGAATCGG ATTATCTGCTCTTCCATTGGGATGTCGCATGCCACCCGCATGGTATGACCTCGGGAGTGC TTGGGATTCCATGCGAAAGGACTTATGTTTAACCGCACTTTCGTAGGAAAGAGGTGACCA CTGAGCTTCCTTCCATAACAAGCAATGGGTTAATATGAGAAGTGCTATGGGATCCTGCCT ATATTTCTGAATCACAACGAGGACTTCTTCTTTTGACAAATGCTGTGGCTATAGGAGCCT CTATATATGGATGAGGAAGGAATCGAGCGAGTGGCAAAAGCTTGTAAGGGTCGATGAAGA ACTTATCTCCTGGAGAATACGAGGAGGCTACAATACCTTCCATCATTTTGATAGAAAACA ACTGAAGAATAATCAAGACAGAATTAATGTCAGAAACCTCTATGGGGTCCTCCTATTACT GATNAATATACATCTTCCCGCAGAATTACTAGAGCCAACTATGGGCTCTACTTCCCCAAT CTTAGTCTGTGACCTTTTGGAAACCTCTCTGTCAAAGAGCGGGGGCGGGAGTCTATGGGG GCACCTCTGTGGACCCTCGTAAAAAGGAATTCCCCAGCTTTTCCTTCCTAAGCCACACAA ACGTTGTTCTTCTGAATATGAGTTAAACACAGAAAAAGATTAGGGAGAACGGGGAAGGAA AAAGCCATGGACTCT |
| GenBank Accession | AL754876 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:1009489 - go to primer design |
| BLAST e Value | 9e-73 |
| Hit Clone Code (BAC ID) | F20H23 |
| Hit Gene Code | At3g03920 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX530755 [GenBank] FR801899 [GenBank] FR801899 [GenBank] AL754874 [GenBank] AL754876 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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