SimpleSearch - Line and FST details


Line specific information

 
Line ID 100H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N409593)
Segregation Analysis N/A (line seemingly not resistant, T2 plants grown without drug)
Confirmed for Hit At3g56350 At3g57420
Parent of DUPLO pair 932, 2792
Parent of pair(s) none

Gene hit At3g56350

 
Sequence (A. th genome BLAST matches underlined) 
>40-012073-strizhov-H5-8409
TTAATGTAGTGATTAAGCTACTTTGTAACATGGTCTATCTCACAAGGATTTGGGAAAAAG
AAAAGAAAAGGATTTGATAGTATTGGTGGGGCACTACAGGATCGCATTGGTGACTAAGGG
ATCACACCTA
GenBank Accession AL755673 [GenBank]
Graphic View Graphic view of gene At3g56350
Predicted Position of Insertion Chr3:20894558 - go to primer design
BLAST e Value 4e-41
Hit Clone Code (BAC ID) F18O21
Hit Gene Code At3g56350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Iron/manganese superoxide dismutase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g57420

 
Sequence (A. th genome BLAST matches underlined) 
>40-012119-strizhov-H5-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTCTTGTTCGTTCGAGATGCTCCAAGGATGAACTGCAGGTGCTTC
CGCTGAATACAAACTCAAAGAAGAGTTTAGCGAAGCTGGTTCTGACTTATATTGGGATCC
TCCCTATAGTGAGTCGTTNNTACTC
GenBank Accession AL755674 [GenBank]
Graphic View Graphic view of gene At3g57420
Predicted Position of Insertion Chr3:21252666 - go to primer design
BLAST e Value 4e-47
Hit Clone Code (BAC ID) T8H10
Hit Gene Code At3g57420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein, putative (DUF288)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37