SimpleSearch - Line and FST details
Line specific information
| Line ID | 110D04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410504) |
| Segregation Analysis | 100:57:47 |
| Confirmed for Hit | At5g15240 At3g55090 At2g05715 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7996 |
Gene hit At5g15240
| Sequence (A. th genome BLAST matches underlined) | >28-K012332-022-110-D04-35St TTGACGAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGAAATATCACGGTAGGTTAGGCTTGGACATTCTTCTGATCA ACTCTTTTTTTTTTAGGGGGGGGTATATTATCGGTCCCTTATGCCTTACCATCCGGAGGA TGGCTAAGTTTGATCATACTTTTCACCGTAGCGATCACAACTTTCTACTGGGCCATTCTC ATTAAAAGATGTATGGAAATGGATCCACTTCTTAAATCATACCCGGACATTGGCTACAAA GCCTTTGGAAACACAGGACGTGTTATCGTCTCCATCTTCATGAACCTCGAGCTTTACCTA TGGGATCCTCCCTATAGGGAGTC |
| GenBank Accession | AL756540 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:4948955 - go to primer design |
| BLAST e Value | 9e-110 |
| Hit Clone Code (BAC ID) | F8M21 |
| Hit Gene Code | At5g15240 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transmembrane amino acid transporter family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL756540 [GenBank] |
Gene hit At3g55090
| Sequence (A. th genome BLAST matches underlined) | >04-K117103-0022-110-D04C-0riL ATTTACATTGAATATATTCCTAAATAGGAATCCGAAACCTACCGTGATAAGCAAGCAGTT CCATTTACTAAGCTGTGTCACTCCTTGCTGCTTCAGAACATCAGCACCCGTCGTTAAACA CGTAGAGCTCGATATCCTCATACCTATCGACCGGCTCACAGAATCCAAAAGCCTCAGCTT CATCCCATACGTCAATTCTCCCAAAGGCGAGTTGTCGAAAAGCTGAACACCTCTCACAAA ACATTCTGTAGGATCCGAGAACTCGTTCTGAAGAACCGCCTCGTATGGATACTTAACCAG AGAAAGATAATGAAACCAAATCCAATACTGAGGGATTCGATCTCTGTTGATGAAGAAGCC ACTGAAAAGCAAGAAGTAAGCTAAAATAGCAACAACGATCGTGTAGCCTAACATCACATG TGGAACGACGCCGGATAAGAAAGTCACGAAGGAGCTTCCGGACCAGAAAGAGGCTAAGAT GATTAAGCAGTAGAATAAAAAGCCCATTAGGCCTCCTTCAAGCCCAACAGCCCAAAACGT CGTCACTGCGAAAGCTAAAGAGAGGAAGATGAGCGAAGGGAAGGTAACAATGGCGTGAGA GAGAACGTAGGAGGATCTCCGGTAAGCGTTGTAAGCTGTTTCTCTCATGAAGATGTAACG TTCCTGGAGGAACACGGGAAGAGCATCGGCGCAAGTGTAGAACATTGTTGACATTGCGAA TGCGAAGAACCCTAACCGCTCTTGAACTCCTTTTGGTGAATTATCCAATCGCCAGAATAC GGTG |
| GenBank Accession | LM644488 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:20416392 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T15C9 |
| Hit Gene Code | At3g55090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ABC-2 type transporter family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL756539 [GenBank] |
Gene hit At2g05715
| Sequence (A. th genome BLAST matches underlined) | >02-K117103-0022-110-D04C-84O9 TGGTATACTAGGGTTCATATGGAAGAAGATGCTGGCAAGTTACTTCATTCAGACACAGGA GATTACTCTCAGGTTCATATGGAATTTATGACAAGTTTCAGTTTGGTTTTATCAGATTCT TGTATTGGTTTTAGGCTTCAGCTGCAAGATGTTTGTGTTTCTTATGTATTAGTTGGTTAC TCTAATGGTGCAAGTAGATTTGAATAGAGCAGGTGTTCTTGAACATGATCTGAGAATTGG TATAAATGCTGCTGAA |
| GenBank Accession | HG968741 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:2146896 - go to primer design |
| BLAST e Value | 2e-138 |
| Hit Clone Code (BAC ID) | T3P4 |
| Hit Gene Code | At2g05715 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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