SimpleSearch - Line and FST details
Line specific information
| Line ID | 114A12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410860) |
| Segregation Analysis | 104:104:102 |
| Confirmed for Hit | At4g32980 T22O13 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g32980
| Sequence (A. th genome BLAST matches underlined) | >89-K012566-022-114-A12-35St NTTTCTGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATA AGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGC CTTCGGTTTAAACTATCAGTGTTTGAAGAACATCCTAGAGATGGGTTTTCTTTGCTTCTA ATGCTCTCCTTTGAAATGTAGATCCGAAACCCGCCTCCGAGTTATTAGAATCACCATCAT GAAACTCAGCTATATTCTCCAAACGTGAAGTAAAGGCTGAACTATGGGATCCTCCCTATA GTGAGTCGTTTTACTCATATTTCGACGTGTCTACTTTCACGTGCAAATGGGGGCTTAGAT GACAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTCGG ATTGGCCTGAGATTATGCGAAAATATACACTCCTATACATGACTACTGACAGTTTGAGCT ACCAATTCACTGTAACCCATTACCTTACATAATGCACTCAAATGCTATGGGATCCTCCCT ATAGTGAGTCGTNNTACCTCACACCTCCTTCACCCCGGACAATCCTTACTCTTCTTAACT ATCTACTTTATGATGATGACCTTGGTAACTCGATTTTATAGCCAAGGTATGGTTTATTTA ATG |
| GenBank Accession | AL756855 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:15916027 - go to primer design |
| BLAST e Value | 3e-63 |
| Hit Clone Code (BAC ID) | F26P21 |
| Hit Gene Code | At4g32980 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | homeobox protein ATH1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL756855 [GenBank] |
Gene hit T22O13
| Sequence (A. th genome BLAST matches underlined) | >89-K012504-022-114-A12-8409 ACTTGATCCATGTAGACTTTCCCGGACATGAAGCTCTTTACACTTGAAAATCATAAAAAT GTATCATGGCAATGCAAATCTATGTTTAAAAATTTATCAGCCAAAATAAATAAAGTTTAT TTGCCTGGTTCCGCCTTTATCTTCAAAATTTCCCTATTCCTTTATATAGTTTTCTAAATC ATATTTTCTCTTATGTTTTCTTTGCGTTGCCAGTACTTGTGTTTGAAGATAGTAATGGTA CATTGGAAAATAGACCACATGGTCCACAATTCCCGGAAATTCATTACTCTTCGAATTAAG CATCCATCCATAGTTAAAACACATTTTGACATAGTAATGTATCTATGGGATCCTCCCTAT AGTGAGTCGTTTAACCTCACCNGCGCCACCCAAGACACCGGCACCGGTGAGACTACTCCA AGCACGTACTTAATTCTCTTATCATATATATATATATATATCTCCCCTCTCTCAAAGAAA AAGAATCTGTGGGAGACCCCCTCTATAGA |
| GenBank Accession | AL756854 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:11640622 - go to primer design |
| BLAST e Value | 4e-146 |
| Hit Clone Code (BAC ID) | T22O13 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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