SimpleSearch - Line and FST details
Line specific information
| Line ID | 124E07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411863) |
| Segregation Analysis | 50:33:32 |
| Confirmed for Hit | At1g17790 At1g18830 |
| Parent of DUPLO pair | 183, 12132 |
| Parent of pair(s) | none |
Gene hit At1g17790
| Sequence (A. th genome BLAST matches underlined) | >53-K012813-022-124-E07-8409 NTGATCCATGGTAGATTTCCCGGGACTGAAGCCATTTACAATTGAATATGATTCTGGGCA CCAGCATATATTTTTAGTTTGTGATATTAGAAATCCTCCTGTGATCACCAATCAACACCG GATCTGTGGGATCCTTCCGTATACCCGAAGAGAAACACCTGTGAAATCAGATTGCTTGCA TCATATTCCGGAGACGGGTTAATGACGATGAAGAGCTTTTTATACCTAATCACCTGTTTG TGAAGAAAACAAAGCGAGTGGATCAAGTAACTCTAACAGTCCTATGGAATCCTTCCTATT TGAGACAGATCACTGAATCGCTCTTCTTTATGATCTGAACAACAGTCTCTATGGGATCCT CCCTATAGTGAGTTGTTTTACTCATATTTAACAAAAGCGAAGGATTGATTGGGCTATGGA CCACCGACATTGCTGGGGTCCATAGATGTGCTACAAATCAATACAGGTGCTTAGTAGAAT ACGGGAATCAACGCATAATGAATGGGATCACGACCTCGGAGAACGACATTTAAAACATCA GGGAAATGTACTCAGCGGTTTTACGTGAAACCAACTTGATTATAAATTTTAAG |
| GenBank Accession | AL764340 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:6125936 - go to primer design |
| BLAST e Value | 7e-09 |
| Hit Clone Code (BAC ID) | F2H15 |
| Hit Gene Code | At1g17790 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNA-binding bromodomain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g18830
| Sequence (A. th genome BLAST matches underlined) | >53-K012813-022-124-E07-8409 NTGATCCATGGTAGATTTCCCGGGACTGAAGCCATTTACAATTGAATATGATTCTGGGCA CCAGCATATATTTTTAGTTTGTGATATTAGAAATCCTCCTGTGATCACCAATCAACACCG GATCTGTGGGATCCTTCCGTATACCCGAAGAGAAACACCTGTGAAATCAGATTGCTTGCA TCATATTCCGGAGACGGGTTAATGACGATGAAGAGCTTTTTATACCTAATCACCTGTTTG TGAAGAAAACAAAGCGAGTGGATCAAGTAACTCTAACAGTCCTATGGAATCCTTCCTATT TGAGACAGATCACTGAATCGCTCTTCTTTATGATCTGAACAACAGTCTCTATGGGATCCT CCCTATAGTGAGTTGTTTTACTCATATTTAACAAAAGCGAAGGATTGATTGGGCTATGGA CCACCGACATTGCTGGGGTCCATAGATGTGCTACAAATCAATACAGGTGCTTAGTAGAAT ACGGGAATCAACGCATAATGAATGGGATCACGACCTCGGAGAACGACATTTAAAACATCA GGGAAATGTACTCAGCGGTTTTACGTGAAACCAACTTGATTATAAATTTTAAG |
| GenBank Accession | AL764340 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:6490272 - go to primer design |
| BLAST e Value | 2e-05 |
| Hit Clone Code (BAC ID) | F6A14 |
| Hit Gene Code | At1g18830 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transducin/WD40 repeat-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MUD21
| Sequence (A. th genome BLAST matches underlined) | >53-K012813-022-124-E07-8409 NTGATCCATGGTAGATTTCCCGGGACTGAAGCCATTTACAATTGAATATGATTCTGGGCA CCAGCATATATTTTTAGTTTGTGATATTAGAAATCCTCCTGTGATCACCAATCAACACCG GATCTGTGGGATCCTTCCGTATACCCGAAGAGAAACACCTGTGAAATCAGATTGCTTGCA TCATATTCCGGAGACGGGTTAATGACGATGAAGAGCTTTTTATACCTAATCACCTGTTTG TGAAGAAAACAAAGCGAGTGGATCAAGTAACTCTAACAGTCCTATGGAATCCTTCCTATT TGAGACAGATCACTGAATCGCTCTTCTTTATGATCTGAACAACAGTCTCTATGGGATCCT CCCTATAGTGAGTTGTTTTACTCATATTTAACAAAAGCGAAGGATTGATTGGGCTATGGA CCACCGACATTGCTGGGGTCCATAGATGTGCTACAAATCAATACAGGTGCTTAGTAGAAT ACGGGAATCAACGCATAATGAATGGGATCACGACCTCGGAGAACGACATTTAAAACATCA GGGAAATGTACTCAGCGGTTTTACGTGAAACCAACTTGATTATAAATTTTAAG |
| GenBank Accession | AL764340 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:26729034 - go to primer design |
| BLAST e Value | 1e-13 |
| Hit Clone Code (BAC ID) | MUD21 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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