SimpleSearch - Line and FST details
Line specific information
| Line ID | 140G03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N413419) |
| Segregation Analysis | 150:125:78 |
| Confirmed for Hit | At5g66220 At4g29660 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g66220
| Sequence (A. th genome BLAST matches underlined) | >23-K012876-022-140-G03-8409 NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGTAAAA TAATTCAATGTGAGTTGAATATCTAATCATTTAACTTTTTTAAATTTTCTTCTCTGGTGG GAAAAGGTGAGTTTGAGAAATTGGCAAGGGTGACGATGAAAAAGAGGTTAACGGGGATAC AATACTCGGAGAAAGTAGTAGAAAACTGTGAGGAGATCATGAAAGCGTCAGGGAAATACA CAAGATCCGAAGCCAAAGCCATTGACCAATTCTTGATGGTCTTCAAAAACCAAGATTTCC CTCCCGGCTCTTCAATCATCTTCGCTATCTGTCCTAAAGGCTCTCTCACAGTGAGTCAAC TTTATTTTTCGGATTATCATTTCGAATAATATTGGTCGAATGAATGATCGAGATCTTTTG ACAACTTGTGATGCAGATTGCATTTTCGAAAGAGGAGAGAGTCCCGAAAACTGGAAAAGC GGTTATCAAGAATAAGTTGTTGGGTGAGGCAGTTCTTGAGTCGATGATAGGGAAGAATGG TGTATCCCCTGCGACAAGGGAAAGCCTCGCTGAGAGATTATCTAAGCTGATGAACAAAAA AAACCCGTACAACGAAACTAACGTCAACGGTTGCTACAAAAATTGAAACTATTTCCACTC GCCCAATCTTGATAATTTTAAAAAATGAAGCCCGCGGAGGATGGTATTTGACTTATGATT ACACCCTAAATAAAGATTGTTGGACCTTATTAAAAACATTTTTATGTTTTTA |
| GenBank Accession | AL765560 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:26461587 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | K2A18 |
| Hit Gene Code | At5g66220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Chalcone-flavanone isomerase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g29660
| Sequence (A. th genome BLAST matches underlined) | >23-K012893-022-140-G03-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTAAACATGGTCTTAGTATCTAATCTAATTCATTGTTCTGTAG TATATTGTATTCTTTGTCAATGTGTTTCTTACACTGTTTTGTGTTAGTATCAGTTATGTT TCTTGTTTGAGTGTGAACTTTATGTTACTCCACTCTCTGTAAACAGGAGAAGTTTTGGGA AGAGCACCCAGGGAAAACAGTGCCTCTGATGAAGCCAGTATTCTATCGAGGACCATGGAG AGTTTATCGTGGTGAGGCTATTGCTTCAGATGCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | BX285162 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:14534751 - go to primer design |
| BLAST e Value | 1e-136 |
| Hit Clone Code (BAC ID) | T16L4 |
| Hit Gene Code | At4g29660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | embryo defective 2752 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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