SimpleSearch - Line and FST details


Line specific information

 
Line ID 175D10
Vector Used pAC161
Line Availability available as T3 set from NASC (N416750)
Segregation Analysis 50:44:40
Confirmed for Hit At5g37800 At3g20760
Parent of DUPLO pair 11670, 12581
Parent of pair(s) none

Gene hit At5g37800

 
Sequence (A. th genome BLAST matches underlined) 
>76-K013532-022-175-D10-8409
NTGATCCATGTAGATTNTCCCGGACATGAACGCCTTTACAATTGAATATATCACTGGTAC
CAAGGTATGATAAATGTATAACAAATTTAATTTTATCGTAACCTTTTTTTTAAACCTATG
GGATCCTCCTGATAGAGTTTTCTTTTCAGCTTCTGTATCATAACCTCCTCTGGCTTAACA
CCAGCACCAGGCTTTGTACGTTTTCTGTTGCCCACTCTACTTTTCCTTTGTTTCATTACA
CTATACATAGGACCCATCCTATGGGATCCTACCTATAGTGAAACCATTCTGTGGTTAGGT
TGGGTTACCAAGATTGGGAGGTATAGATTACTGTTTCATTTTATTTTAGTAAGTGCCTAT
GGGATCCTCCCTATAGTGAGGGCNNCNNNNCCCGCCCNNCCCGGTCCCGTTTCTAGCCAG
AGGGGGTTGATACCCCCACCCTATAAAAAACATGTTCCCACACTCCCGGGCACAAGCGTT
ATCATTTGGGTAAACACACGCATAAAATGGGCCCCCCGGGGCAAAAAAAATATATAAACT
GGAAAAGGGTTTGG
GenBank Accession AL770868 [GenBank]
Graphic View Graphic view of gene At5g37800
Predicted Position of Insertion Chr5:15037128 - go to primer design
BLAST e Value 1e-16
Hit Clone Code (BAC ID) K22F20
Hit Gene Code At5g37800 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RHD SIX-LIKE 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL770867 [GenBank]

Gene hit At3g20760

 
Sequence (A. th genome BLAST matches underlined) 
>76-K013532-022-175-D10-8409
NTGATCCATGTAGATTNTCCCGGACATGAACGCCTTTACAATTGAATATATCACTGGTAC
CAAGGTATGATAAATGTATAACAAATTTAATTTTATCGTAACCTTTTTTTTAAACCTATG
GGATCCTCCTGATAGAGTTTTCTTTTCAGCTTCTGTATCATAACCTCCTCTGGCTTAACA
CCAGCACCAGGCTTTGTACGTTTTCTGTTGCCCACTCTACTTTTCCTTTGTTTCATTACA
CTATACATAGGACCCATCCTATGGGATCCTACCTATAGTGAAACCATTCTGTGGTTAGGT
TGGGTTACCAAGATTGGGAGGTATAGATTACTGTTTCATTTTATTTTAGTAAGTGCCTAT
GGGATCCTCCCTATAGTGAGGGCNNCNNNNCCCGCCCNNCCCGGTCCCGTTTCTAGCCAG
AGGGGGTTGATACCCCCACCCTATAAAAAACATGTTCCCACACTCCCGGGCACAAGCGTT
ATCATTTGGGTAAACACACGCATAAAATGGGCCCCCCGGGGCAAAAAAAATATATAAACT
GGAAAAGGGTTTGG
GenBank Accession AL770868 [GenBank]
Graphic View Graphic view of gene At3g20760
Predicted Position of Insertion Chr3:7257744 - go to primer design
BLAST e Value 3e-57
Hit Clone Code (BAC ID) MOE17
Hit Gene Code At3g20760 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Nse4, component of Smc5/6 DNA repair complex
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL770868 [GenBank]


Last Updated on 10.06.2021 13:37