SimpleSearch - Line and FST details


Line specific information

 
Line ID 184B02
Vector Used pAC161
Line Availability available as T3 set from NASC (N417582)
Segregation Analysis 50:40:39
Confirmed for Hit At5g23510 At1g05850
Parent of DUPLO pair 6876
Parent of pair(s) none

Gene hit At5g23510

 
Sequence (A. th genome BLAST matches underlined) 
>10-K013651-022-184-B02-8409
NAATTGATCCATGTAGCACTTCCCTTACATGAAGCCCTTTACACTTGCATCAACACCTAA
AAAAACAAAACTCACAGGCAACCCACACTATACTGAGCATATCAAGATTCCAGTATACCA
CAAAATCATAATCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL771892 [GenBank]
Graphic View Graphic view of gene At5g23510
Predicted Position of Insertion Chr5:7928020 - go to primer design
BLAST e Value 5e-13
Hit Clone Code (BAC ID) K19M13
Hit Gene Code At5g23510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g05850

 
Sequence (A. th genome BLAST matches underlined) 
>10-K013649-022-184-B02-8409
CTGATCCATGTAGATTNTCCGGNACATGAAGCCTTTACAATTGAATATATCCTGATATTA
TTATTTAATGTTTTTCAGTTTTTTCATGTTGCTACTTTCTGATTTCAGGGAGAGCTTGTG
AAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCCGTAAGTTAATCTATTTACTTAGC
TATGGGATCCTCCCTATAGTGANNGAATCANGGAACCTTGACCACATGTGTACTCTCCGT
AAAGGACGTTCATGGTGCTGCCAAAAGTCGGGCCACGCTTGGACAAAGTGACGTTCTTTG
CAGGCTTCCAGTTTCCGACAAAGATGTCGCGAGCTGCAGGCTGAGCTCTCTTGATGGGAG
CCATCCACTCTCCAAATGCACNTAGGAATGCCAGTGTCGCGTTGTGCTCAATGAACTCAN
GCCGCGTCAAGACATCACCTTTCAGGGCTTCCCCAGGTGCTCCGGAGGTGAAG
GenBank Accession AL771891 [GenBank]
Graphic View Graphic view of gene At1g05850
Predicted Position of Insertion Chr1:1766833 - go to primer design
BLAST e Value 2e-76
Hit Clone Code (BAC ID) T20M3
Hit Gene Code At1g05850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Chitinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37