SimpleSearch - Line and FST details


Line specific information

 
Line ID 363H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N434841)
Segregation Analysis 50:50:49
Confirmed for Hit At3g43210 At1g60080
Parent of DUPLO pair 2672
Parent of pair(s) none

Gene hit At3g43210

 
Sequence (A. th genome BLAST matches underlined) 
>40-K017000-022-363-H05-8409
GATCATGTAGATTTCCGGACATGAAGCCTNTTCCATTGATATATACCTATGGGATCCTCC
CCATATAGAGATAGGAAGTGATGTTAAACTACCGACATTGCGGATGGCATCCTTTCCTAC
AAAAGAGGCTGCGTTAGTAAGAGAAGCACGCTCGCTTCCAGCAAGATCAACAAGATACTG
CACCAATTAGAATGTCATGAATACCAAGTGAAGCTTCGACCCAATGATCATAAATGACGT
ACCAGAGTTGCCATGAAAGACTGCACACAGCCTGCTATTTCCCTGATACTGCGATGGATG
GTCTGAATATTAAAAGCAGATAACATGAGAAATTATGGGAAGTGGTTACTTTTACTGTCT
AATGGTAGCAAATAACTATGGGATCCTCCCTATAGTGAGAGGAAGCACATAACTTACCTT
GAGACTATAGATAGACCCGCTGTTTGCTACACGACAGTGTTGTAGTGAATATGAAACACT
AGCAACATAGCGTGATAAGAAGATTGAAAGCTCACGATCGTCCTAGTAATGGGGATTTCG
AC
GenBank Accession BX002393 [GenBank]
Graphic View Graphic view of gene At3g43210
Predicted Position of Insertion Chr3:15193066 - go to primer design
BLAST e Value 3e-106
Hit Clone Code (BAC ID) F7K15
Hit Gene Code At3g43210 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ATP binding microtubule motor family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g60080

 
Sequence (A. th genome BLAST matches underlined) 
>40-K016995-022-363-H05-8409
TGATCTGTAGATTTCCGGAATGAAGCCATTTACATTGAATGATATACATGTGAAGATGAT
GCGTTTATGAGGAATCGTCCCTCTGTCATGTCTTTGAGCGTCATCTCTCTGAATCTCTTC
GTCCTGATGGAAGACTACTTAGGAAAAGCTATGGGATCTCTCACCTATATAGAATTTCTG
TTATTTTGGTTGAAGTTCTGGAAGAAAAAGGGATCACGTGCCGTATAGAGACTCAAAGCT
GACAAGAATTTTGCAAAATTCACTTGGCGGGAATGCTATGGGATCCTCCCCTATAGTGAG
ATGCATCTGGTATTCCCATGTTTTCTTTAGCTCTGCTTCATGTCACAAAGATAAAGAGAA
TCATAAACCAAAAGTCTCTGAGTCTGTGCTTCATCAACACAGTCTCAAGGAATCACAAAG
CTTACCTTGGGACAAAAGAAAGAACTGCCTTTGGTACACGAAACTGTTGTAGTGAAGAGG
AAACACAAGCAATAGAGTGTAAGAAGAAGATTGAGAGCTCGCGGTGTCGTAAGTAATGGG
GATTTCGACGGAGACGGTGACGGGGACGACGGCTATGGGATCCTCCCTATAGTGAAGACC
CAATTGGGTCAGTGACTACATGGGAATTGGGGATCCTCT
GenBank Accession BX002392 [GenBank]
Graphic View Graphic view of gene At1g60080
Predicted Position of Insertion Chr1:22154079 - go to primer design
BLAST e Value 1e-151
Hit Clone Code (BAC ID) T2K10
Hit Gene Code At1g60080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 3'-5'-exoribonuclease family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37