SimpleSearch - Line and FST details


Line specific information

 
Line ID 476D03
Vector Used pAC161
Line Availability available as T3 set from NASC (N445639)
Segregation Analysis 100:80:72
Confirmed for Hit At3g55730 At5g53400
Parent of DUPLO pair 6854
Parent of pair(s) 6835

Gene hit At3g55730

 
Sequence (A. th genome BLAST matches underlined) 
>20-K019131-022-476-D03-8409
TAGTACAACCACACAGCTTTCGCAGTTGTTCCAATTATGGAGACAAAGATTGTTCTCATT
CACTTCTCCATCTTCTAACCACAAGAGACTCGGATATTACACAGAACAATGGTTTACCCA
GACATTTTGTCACTTCTCTCACAAAATTCGTTTGATGACGAATACACAAGCCACCCAAAC
CACTCTGGAATTTGCACTGAAGATCGAGAAAATCACTCTGAACATTTGCAAGAAGAACAG
TAAAATCAAATCAAACGAAACCTCAAAAACCCAAAACCCAAAAGCAAAGAATCTGAATTT
AGATGTAACAAAATCAAGAGGGTTTTAAAGTTTGTTTACCAGAGAAAGGTTTACGCTTGA
GACAAGGGTCAAGCTGATTACACCAACGCAATCGACAAGATTTACCAGAACGACCAGGGA
TTCCACGAGCGATCAAACTCCAATTCCTCGGTCCTATGGG
GenBank Accession CR770396 [GenBank]
Graphic View Graphic view of gene At3g55730
Predicted Position of Insertion Chr3:20683234 - go to primer design
BLAST e Value 4e-90
Hit Clone Code (BAC ID) F1I16
Hit Gene Code At3g55730 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb domain protein 109
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g53400

 
Sequence (A. th genome BLAST matches underlined) 
>20-K019272-022-476-D03-8409
ACATGAATTACTTAAGGATCTCTTGCTTCTGTAGCTCCTCGCTTGTTGGAAGACCCATCT
GCTTTTGCCTTTGATCAAACTATGGATAGAAAGACAACAAAGAAAAACACACTTCAGTTT
CTAATTCGAGAAACTTGAATAAAGAAAGAAACAATTCTTTAGAAGACATACCATCATTTT
CTCAACAGTCGAGCGAGTTTCTGGATCAAGGTCACCTAATTTACTATGGGATCCTCCCTA
TAGTGAGCGGTATTACTCAAGNNNNNNNNGNNNGANNANNNGNNNNNTNNNNTCNNNCGA
NNCCTCNNNNNCCCNNNNCCCNNNAGCAAAGAATCTGAATTTAGATGTAACAAAATCAAG
AGGGTTTTAGAGTCTGTTTACCTGGAAAGGGTGTACGCTGGAGACAAGGGTCAAGCTGAT
TACACCAACGCAATCGACAAGATTTACCAGAACGAGCAGGGGTTCCGCGAGGGATCAAAC
TCCAATTCCTCGGCCC
GenBank Accession BX293216 [GenBank]
Graphic View Graphic view of gene At5g53400
Predicted Position of Insertion Chr5:21663251 - go to primer design
BLAST e Value 3e-122
Hit Clone Code (BAC ID) K19E1
Hit Gene Code At5g53400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation HSP20-like chaperones superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37