SimpleSearch - Line and FST details


Line specific information

 
Line ID 760A07
Vector Used pAC161
Line Availability available as T3 set from NASC (N472871)
Segregation Analysis 50:50:50
Confirmed for Hit At5g01500 At5g44320
Parent of DUPLO pair 11651
Parent of pair(s) 2050

Gene hit At5g01500

 
Sequence (A. th genome BLAST matches underlined) 
>49-K024639-022-760-A07-8409
TCAATGTACTTTACTACAATCCTGTAATTTTATCACAATCGCAAATACTCCTCATATTCC
CCTCAAGGGTCTTGCCTTGAAAGATTGAAATATATATATTTGAACTATTTTATCATAAAC
CATGTCATGGAATAGTCTCTTATGAATATAAAAAAGAAGAGGAAAATCAACAATGTCCCA
CAAGCAACAACTATGGGATCCTCCCTATAGTGAGTCGAATTACACATTGATATATACTAT
GTTAGCATCCCAATGGTGAAGTCCAAAATAGCAAGCTAATAACATATCCACTGTTTTTGA
GATGTATCAAGATAAGAGTGGTGGGTAGAGACCAGAGTATTACATGTTCACAAACACTGA
GATTCTACCACATGGTTTTTATACGTGTGAAAGACGATAAACCTGAGACCAAGTGG
GenBank Accession BX946207 [GenBank]
Graphic View Graphic view of gene At5g01500
Predicted Position of Insertion Chr5:199848 - go to primer design
BLAST e Value 4e-43
Hit Clone Code (BAC ID) F7A7
Hit Gene Code At5g01500 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation thylakoid ATP/ADP carrier
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g44320

 
Sequence (A. th genome BLAST matches underlined) 
>49-K024594-022-760-A07-8409
NNTTTCGTCACAATTCCGGACATGAGCCATTTACATTGAATATATCCTAAATGGTAATAA
GTTAACTAATTGGACTGCGCATGCTCTCTTGGCAAATGCGGATATGATGAGGATTGAGTT
TGCTTATAGGATCCAACCTCCTTGACATATTACCTGTGATTTTTTAGCGATTCCTCAGAA
ACCTGCACACCAATGCAGATGACTTTTCTTATGTGATTATTAACTATACTTTTCTATTTA
TATACATAACCAATGAACATCAACCATACTAATTTAAATTAAAAGGATTGTATCATCAAA
TCAATGTGACTCTGATACTATTTACCGCATAGTCTACAAACCGCGACGACATAAACATTG
ATACATACTGACACTGCCTGAAACATGTACTTTATTATGGTAACGGCACAACTGATCCCG
ATATATGACTTATTTCATGATTGATAGTGTGAATAGAGACCTGCATAATTTTATGCACCC
ATGGGACAGACTTCTATGCAAAATCCTGAAAGTTGGACACATATCCCCTACCTTCATAAC
CTTTCTCANTCACGA
GenBank Accession BX946206 [GenBank]
Graphic View Graphic view of gene At5g44320
Predicted Position of Insertion Chr5:17855344 - go to primer design
BLAST e Value 3e-19
Hit Clone Code (BAC ID) K9L2
Hit Gene Code At5g44320 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37