SimpleSearch - Line and FST details


Line specific information

 
Line ID 786C06
Vector Used pAC161
Line Availability available as T3 set from NASC (N475390)
Segregation Analysis 50:47:43
Confirmed for Hit At1g61210 At1g16170
Parent of DUPLO pair 11906
Parent of pair(s) none

Gene hit At1g61210

 
Sequence (A. th genome BLAST matches underlined) 
>43-K024930-022-786-C06-8409
AGTTTAGCTTAATACGTGAGTCGTAAATGCCCGTCTGGAAGCTGCAAGAGTCAGATCATA
GTCCTATGGGATCCTCCCTATAGTGAGTCGGATTACTCAATCCCTACTGAATTTTGGGAG
TATGAACGACCCAGGAGCTTTCCTTCGCTGATGCATAAGTCACCAAGCGTTGACCATCCC
ATATCAACACCATCATGGCAAACCACAGGTTCCCATGAATAAACCTGAATTATGAACATC
AGCTTATGATATCAATGTTTTTGACTCTGGAGAACCCTTTATATGGTAAAGCTCATCACA
AAGAAAATCAAAACCTTTAAGCTGTCATCCAAACCACAAAATAAGGTTCGCCCATCCGGA
TGAAATTTGATTGAACGAACTCCAGTAGCCTGTGAAAACAAGGAAAACCACATACCACAT
AAATTGTGTGAATAACATCTTCCGAGACGGCTACAAAGCTATGGGATCCTCTCTATAGAT
GAGTGCGTTAGATCTTTCTATACTAAGATATTC
GenBank Accession BX947990 [GenBank]
Graphic View Graphic view of gene At1g61210
Predicted Position of Insertion Chr1:22567008 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F11P17
Hit Gene Code At1g61210 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g16170

 
Sequence (A. th genome BLAST matches underlined) 
>43-K024946-022-786-C06-8409
AGCCATTTACAATTAAAAAAGTTTATCTTAATACGTATTCGTAAATGCCCTCTGGAAGCT
GCAAGAGTCAGATCATAGTCCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCCTGGC
TTTAGGGGGACTTGGTGATTCAGGGGGTTGTGGGGTTTGGGGATTTGGGGGGTTGTTGGC
CTTTGGGGGACCGGGGGGTATAGGGGGGGGGGGGGCGGGTTCCAATTAAAATATTTAATC
TATCGGCTCTTTTCTCCTTTATGAAAATTAGTTCTGGTAACTATGTGTACGCTAGTTTGT
ATTATTCGCGTTTTTGTCATTTTGTGTATTTATTTTGATTGTTTATGGTACAATTACTTG
TTTACGTTTCCGAAAGTAGTGAGTTCATGGATAAATAATTAGTCTTATTTTTTATCCTTC
TAATTTTGGGGGGGTTAGTTATAGAGACATGTCTTTGTTTCTAAGTGT
GenBank Accession BX947991 [GenBank]
Graphic View Graphic view of gene At1g16170
Predicted Position of Insertion Chr1:5540007 - go to primer design
BLAST e Value 5e-33
Hit Clone Code (BAC ID) T24D18
Hit Gene Code At1g16170 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ephrin-A3 protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37