SimpleSearch - Line and FST details
Line specific information
| Line ID | 868E09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N483289) |
| Segregation Analysis | 50:9:5 |
| Confirmed for Hit | At2g40940 |
| Parent of DUPLO pair | 2357 |
| Parent of pair(s) | none |
Gene hit At2g40940
| Sequence (A. th genome BLAST matches underlined) | >69-K026113-022-868-E09-8409 AAGCCATTTACAATTGAATATATCCTGACTTTTTCGATCACATGATAATATATGTCAAAG GCGGGAAGAGACTATCTGATCCCCCGCTATGGGATCCTCCTTATGATGAGTCGTTCCCCT CAATGAAGAACCTATCCTCGAATCTGATTAGGTCTGCAAACTCACTAATTTATGCTATTG ATGATTAGAGCTTTTCATGCTAGTCATTCTCAACATCCTGTGCTCCGCTGTGAAATTTAC CAAGGAAAGATAAATCTCCATAATAACCTCTATCAGGATCCCCGAGTCCTTATCAGAATT ACCATCTCCTGAATTTTTTCCAGTTCTCAGTGACAGTCCCTTCTACCTATGTGTGCAGGT TAAACCCAATCTACAAATTACTAAACTACAAAGTTAAGCTTCTTACTGTGTTCTTACTGT TATAATCATGGTGCANGTGAATTACACAGGCTGTGGAATTCNTACACCATACATTCCTTT GATCTTTACCAAATTTGTA |
| GenBank Accession | CR404102 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17085423 - go to primer design |
| BLAST e Value | 3e-102 |
| Hit Clone Code (BAC ID) | T20B5 |
| Hit Gene Code | At2g40940 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ethylene response sensor 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g42180
| Sequence (A. th genome BLAST matches underlined) | >69-K026080-022-868-E09-8409 GACATGAGCCATTTACATTGAATATATCCTGACGCTTACCTGAATAATGAATCTATCTCA CACTCTTCTTTTATGTGCATTAATCCACAATCTCGACTATTTATAAGGGACTTTCTTGAC GTTTATAACCTTACCAGTCCCTGTTATTTACTTATATGAATATGACATAACATTTTGTCG TATGGGATCCTCCCTATAGTGAGANGNNNGGGTCNNNNNTCTTTGCTCTGNTGACAGTTC TNTCTCGGGGGGTTGACTCTCCTTAGAAATGATCGGCAAGGATCGGCGACCCCTTATCGG AATTACCATCTCCTGAGTTTTCTCCTCTACTCAGTGAGAGACCCTTCCAATTATGTGTGC AGGTTANACCCAATCTACAAATTACTAAACTACAAAGTTAACCTTCTTACTGTGTTCTTA C |
| GenBank Accession | CR404101 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17581645 - go to primer design |
| BLAST e Value | 2e-63 |
| Hit Clone Code (BAC ID) | T24P15 |
| Hit Gene Code | At2g42180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cotton fiber protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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