DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_007422c
Line Availability available from NASC (N656137) and ABRC (SALK_007422c)
Confirmed for Hit At1g48620 At1g79590
Parent of DUPLO pair 1151
Parent of pair(s) none

Gene hit At1g48620

 
Sequence (A. th genome BLAST matches underlined) 
TAATATAAATGTAATTAGATAACTAACTCATCAATATAATAGACAAAGAAATTCTAGTGG
ACTTGGAAATACACAAACTCTTGAACTTTGACTGAATTAACTAAATTTCTGCTTAAAACA
GACAAAACTTGATAAGATGTCTGTCTCANAAGATAAGTTCATATGTAATTCTCACACTTC
AACTGAACAATTATTGGTTGCTAAAGCGAGCCACCTACCAAGTTGCTCTTGATTTACCAA
CAAAGAGATATCTTAGATTAATAGTACACCACAAAACCAGATTAAGTATAGCCNAAAGCG
GAGACCCGAATATAANTTAAACTCTAGAAATTATTTTAGTAAGATACTCTCTAGTCTCCA
CACACACCCTCGAAGGAAACATGGTAGAGATGA
GenBank Accession CC051433 [GenBank]
Graphic View Graphic view of gene At1g48620
Predicted Position of Insertion Chr1:17974566 - go to primer design
BLAST e Value 1e-180
Hit Clone Code (BAC ID) T1N15
Hit Gene Code At1g48620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation high mobility group A5
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit queueing for submission to ENA/GenBank

Gene hit At1g79590

 
Sequence (A. th genome BLAST matches underlined) 
>78-K118526-SALK_007422C-R212
CCTTTGGGGGATTTTGAACGCGGTGCCATTATCCAGAAACACAAACCGGGTACATTAAAT
TCAAGGCGAGATGTGAATCACCTTAAACTAAAAAATTATTGCTTTTTTTGATAAAAAAAA
AAAGCAACGACCGAGAGATTCTTAGACATAATAGACCAGTATATTGTTAAAATCACTTGC
TTGCCTTCCTATTGTTCTTTAGCTTATCAATGGACCAGCTTAAGCTAGTGACTAATGAGA
CTAATTTGTTCGAAGCATATACTTACCCGTAAGCGAGAGTCAGTGATATCCACATCGTAA
TCTAAGTCATCCTGCATGGAAGAAAGTCCCATTTCGTTAGAATAAGAAATCAAAATCAAC
AAGAAAAGCAATGAACAACAGCGGAGACATACAATAAGCCTTGTCTGCAGGGTGAGCTCC
TCGTTAACAGCGAGAGCAATGTGTTTGGTACTCATGACTGTTTCCTCCAACTTCTCAAGT
CCCTCGTCTTGTTCTACTCATGGAAATAAAATACAATCAAAGAGAAATTAATACAGACGC
CAAGATCA
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At1g79590
Predicted Position of Insertion Chr1:29948183 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F20B17
Hit Gene Code At1g79590 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation syntaxin of plants 52
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37