DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_065267c
Line Availability available from NASC (N657654) and ABRC (SALK_065267c)
Confirmed for Hit At1g72740
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g72740

 
Sequence (A. th genome BLAST matches underlined) 
AAGTTAGAGACGTTTTGTTTTGTTTTGCTTAGCCAATAATGAGAAAAGAGTCTGGCTTTT
TCTTACATAGTTCATGCATCTCAGTAGCTATGACCAGGAGTTTTCTATTTTCTTCTGCAA
TCTTTGTCATCTTCTCAAACTCTTCTGCTGCTAGTTTGGCAACGTCTATTTTATTCTCCG
CCTCTACGACTTTACAGGCTGCGGTTATTGCAGCTTCCTCGATCATCTGTTGTGAATCAG
CAGAGGTCTGATTGTTTGCTTGGCGCAGCTTCGTATGTGTCTCCTTTGGTTTTGGGACAC
CTATTTTTGTTCCTGATGGATCGGGTATCTTATAGAAGTTCTGTATCTGTTATATGTTGG
ATTGAACAACACAGAAAGAAAAACCAAAGACATAGCATGAGAAGGCTTTAAAGAACATTG
TCACTGCTTCAGTTATTA
GenBank Accession BH911127 [GenBank]
Graphic View Graphic view of gene At1g72740
Predicted Position of Insertion Chr1:27380556 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F28P22
Hit Gene Code At1g72740 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Homeodomain-like/winged-helix DNA-binding family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g37760

 
Sequence (A. th genome BLAST matches underlined) 
ACATAATTATGGCATTTATTTCTAAAAGTGATGTACTGTCAAAGTCTTAAACAAATAGAA
ATTGGTTTGTTCTTTTTTTTTTTGGAAAGGGGGTCCCTTTTTAACCTTAGGGAAAAAATC
CCTTTTCCTTAAAAGGTGGAAATTAGGGCCTTTTTGGAAATTAAACAAACCCGGGGCGGA
AAACACCGGGGCCCTAAAGGGGGGCGAAAAANCCCCCCCNNGCCCCTATTNNGNCCGAAA
ANGGGGAGGTCGGGGGGCGGGGGGGGGGGGGGCGGGAAGGGCGGGGCGGGCGCAGTCGCG
CGCGGCGCCGGGGGCACCGTGAACGGCACCGAGGAACGTCGCACGGCCGCCCGGGAGGTG
GAGCGTGCGACCGCAGCGAACGCCATCAGTCCGTCGGGGGGGTGGCGAGGATGGAGGGGG
GGCC
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At2g37760
Predicted Position of Insertion Chr2:15831773 - go to primer design
BLAST e Value 4e-33
Hit Clone Code (BAC ID) T8P21
Hit Gene Code At2g37760 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAD(P)-linked oxidoreductase superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status failed


Last Updated on Thursday, 10 June 2021 13:37