GABI DUPLOdb - pair details


Details for pair 1205
  
  Pair Info Parent 1 Parent 2
Pair ID 1205    
Parent loci   At4g13070 [Araport] [TAIR] At3g23070 [Araport] [TAIR]
Gene Annotations   RNA-binding CRS1 / YhbY (CRM) domain protein CRM family member 3A;
Pair-related paper(s)  
Similarity (TAIRv10) 17.7 %    
Gap (TAIRv10) 64.9 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   895G12 / At4g13070 SALK_125653 / At3g23070
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At4g13070 Graphic view of gene At3g23070
Parent line's confirm. status   confirmed, show confirmation seq's Failed
Primer and wt-amplicons   show primer details not done or failed
 
Doublemutant ID 1205/1a1.23
NASC set ID N2102811
Assigned allele   895G12 SALK_012128c
Allele genotype in parent   Het Het
Allele genotype in DM   Het Hom
Comment(s) and/or quirks No homozygous double mutant could be obtained (potential reason unknown, but there may be hints in "Observed phenotype").Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).
Observed phenotype DM seedling lethal, homozygous DM seedlings very small
Image(s)
(click image to enlarge)

 

Last Updated on Thursday, 06 December 2018 16:11