GABI DUPLOdb - pair details


Details for pair 2014
  
  Pair Info Parent 1 Parent 2
Pair ID 2014    
Parent loci   At5g63030 [Araport] [TAIR] At5g40370 [Araport] [TAIR]
Gene Annotations   Thioredoxin superfamily protein Glutaredoxin family protein;
Pair-related paper(s)  
Similarity (TAIRv10) 49 %    
Gap (TAIRv10) 29.4 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   509E02 / At5g63030 SALK_076722 / At5g40370
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g63030 Graphic view of gene At5g40370
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2014/2a2.26.4
NASC set ID N2102840
Assigned allele   509E02 SALK_076722
Allele genotype in parent1   Het  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11