GABI DUPLOdb - pair details


Details for pair 2517
  
  Pair Info Parent 1 Parent 2
Pair ID 2517    
Parent loci   At1g17460 [Araport] [TAIR] At1g72650 [Araport] [TAIR]
Gene Annotations   TRF-like 3 TRF-like 6;
Pair-related paper(s)  
Similarity (TAIRv10) 59.9 %    
Gap (TAIRv10) 16.7 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   406G11 / At1g17460 751B12 / At1g72650
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At1g17460 Graphic view of gene At1g72650
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2517/2a1.17.1
NASC set ID N2102878
Assigned allele   406G11 751B12
Allele genotype in parent1   Hom  
Allele genotype in parent2     Het
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 


Last Updated on Thursday, 06 December 2018 16:11