GABI DUPLOdb - pair details


Details for pair 323
  
  Pair Info Parent 1 Parent 2
Pair ID 323    
Parent loci   At3g04420 [Araport] [TAIR] At1g33060 [Araport] [TAIR]
Gene Annotations   NAC domain containing protein 48 NAC 014;
Pair-related paper(s)  
Similarity (TAIRv10) 22.1 %    
Gap (TAIRv10) 57.6 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   687F10 / At3g04420 SALK_024241c / At1g33060
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At3g04420 Graphic view of gene At1g33060
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 323/2b1.6.01
NASC set ID N2102779
Assigned allele   687F10 SALK_024241c
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11