DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_040027
Line Availability available from NASC (N540027) and ABRC (SALK_040027)
Confirmed for Hit At1g52370
Parent of DUPLO pair 12880
Parent of pair(s) none

Gene hit At1g52370

 
Sequence (A. th genome BLAST matches underlined) 
TGGAATCCCCTTTCTCACAAGGTGGTGAATATTATACCATTTGAAGCTGTTTAGTTTTGA
TCATTTCGGTTTAGATAATGTTAAATCATTTCTGAATCTATTGTGTTCTTAGTGAAATTT
CAAAATGTCAGGTGTTATCTTGGATTTTTGTTTAATATAGTGTTTGTG
GenBank Accession ED585542 [GenBank]
Graphic View Graphic view of gene At1g52370
Predicted Position of Insertion Chr1:19507155 - go to primer design
BLAST e Value 1e-86
Hit Clone Code (BAC ID) F19K6
Hit Gene Code At1g52370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein L22p/L17e family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g06365

 
Sequence (A. th genome BLAST matches underlined) 
TTGCGATGGTCCCTGCGGATGCTAACGCAATGTGATTTCTGCCCAGCGCTCTGAATGTCA
AAGAGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGG
TAGCCAAATGCCTCGTCATCTAATTAGGGACGCGCATGAATGGATTAACGAGATTCCCAC
TGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCG
GGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGT
GTAGGATAAGTGGGAGCTTCGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACT
TACTCCGTGAATCGCAGGCGGGGTACAACCC
GenBank Accession ED585541 [GenBank]
Graphic View Graphic view of gene At3g06365
Predicted Position of Insertion Chr3:14202259 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F21A14
Hit Gene Code At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation novel transcribed region
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on Thursday, 10 June 2021 13:37