DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_048014c
Line Availability available from NASC (N657928) and ABRC (SALK_048014c)
Confirmed for Hit At5g18130
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At3g30875

 
Sequence (A. th genome BLAST matches underlined) 
GAGGGAAAAAAGTAGGTGGCTCGATTTAATGGTGGAAAAGAGACGCAAACCCATTGTCCA
GACCATTTCAGGTGTCACAATCGCAATGATCATAGGTCTACTAATTTCTTGGAAACTCGC
GTTGGTAATGATCGCGGTACAGCCACTCTCTATCCTTTGCTTCTATACCAAAAAGGTTTT
GCTCTCCAAAATTTCCAACAATTACGCCTATGCACAAAACCGTAGCTCACAGATTGCATC
AGAAGCTATTTACAACCACAAAATTGTTACATCCTTAGGGTCTACGAAGAAGATCATAGA
AATATTTGACAATGCTCAATATGAGGCAAAAAGAAAGGGTAGGAAGGCAGCTTGGCTCGC
AGGCTTTGNGGATGGGGTCTGCACAATGCCTAACATTCTTGACATGGGCATTAGACTTTT
GTATGGAAAGAAGATGGGTTGGTCACAAAAAGGGGAAATATCGGNNCCGGGGATGTATTC
AAGACATTCTTTGGTTTGG
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At3g30875
Predicted Position of Insertion Chr3:12651383 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MJI6
Hit Gene Code At3g30875 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification CDSi
Confirmation Status failed

Gene hit At5g18130

 
Sequence (A. th genome BLAST matches underlined) 
GCAGTGACTTGAATAACAAGAAAGAAGTTGTTTGGGATTGAAGGTGAAAGAACGAATTCT
GTNGGAAGAAGGGTCTTAATGGAATTGGAGCTATATGTTCATTTGGTGTTGCAGCTGCTG
CAGCCACCATATGTGTCTTCTTCCTTGGACACAACAGTAGCATCCAAGGTGGTCGGAACA
AGAACCAGATCCTCAGGTTCCAGATTTACTCTGATGATAATAAGGTAAAAAATTTAAAAT
ATGATTCTTGTTAGAAGTCACTTAGTTAAGGAAAATTA
GenBank Accession BH908418 [GenBank]
Graphic View Graphic view of gene At5g18130
Predicted Position of Insertion Chr5:5996139 - go to primer design
BLAST e Value 1e-132
Hit Clone Code (BAC ID) MRG7
Hit Gene Code At5g18130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37