DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_137776
Line Availability available from NASC (N637776) and ABRC (SALK_137776)
Confirmed for Hit At1g76720 At4g33040
Parent of DUPLO pair 1861
Parent of pair(s) none

Gene hit At1g76720

 
Sequence (A. th genome BLAST matches underlined) 
>85-K119949-SALK_137776C-LBb3
GGAACCAATGGGTCGGAAGAAGCCGAGTAGTTCTCGAGGTGGAGATGATGAGCAACCACC
TGCTGCGTCATCTCTCGTTGGTGCTGAATCCAAGAAGAAAGCTGTCCAAAGTGATGAAGA
AGATAAGTACTCCATAAATACTGAGGAAGAGAAAGTTGTTATCACTGGGAAGAAGAAGAG
TAATAAGAAGGTTACGCAGAAGCATGATGACGACGATGATTTTACTGAGGCTGTTCCCGA
GAATGGTTTTGTAGGGAAGAAGAAGAAGTCCAAAGGTAAGAACAGAGGTGGCTCTGTTAG
CTTTGCCCTGCTTTCTGGTAAGGAGGAAACGGATGATAATGAATCTAATGGGGACAAAGA
TGATGAGCCAGTTATAAGTTTTACAGGTAAGAAGAATGCGTCTAACAAGGGTAAAAAAGG
CTTTGCGGTTTCAGCTTTTGATGCCCTTGGTGGTGATAAGGATGACGAGGAAGTGGATGG
AGATGAGGAACAAGTTTCACCTATCACTTTCTCTGGTAAGAAAACGAGGTCCTCCAAATC
TTCTAAGAAGACCACTAATAAAGTTGCTTTGCCTGACGAGGAAGAAGGGACAATGGGAGA
CGAAGAGAGCCTCGAAATCACGTTTTCCGGTAAAAAGAAGGGCAGCATTGTTTTGGCCTC
ACTAGGTGATGACTCAGTTGCCGACGAAACTAGTCAAGCTAAAACTCCTGATACTAAGAG
TGTGGAGGTTATAGAAACTGGAAAGATCAAGAAAAAGAAGAAGAATAAGAATAAGGTTGC
AAGGACATTAGAGGAAGAGGATGATTGGACAAACTTCTGCAGAACT
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At1g76720
Predicted Position of Insertion Chr1:28798787 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F28O16
Hit Gene Code At1g76720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation eukaryotic translation initiation factor 2 (eIF-2) family protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g33040

 
Sequence (A. th genome BLAST matches underlined) 
GAGGAATCAACGGAAGCCAAGATCCGACGGCTGATATCGGAGCATCCTGTGATCATCTTC
AATATATCTTCATGTTGCATGTGCCACGCCATGAAGAGACTCTTAGCAACGATCGGCGTA
ATCCCCACCGTCATCGAGCTCGATGATCACGAGGTTTCCTCTCTTCCCACGGCTCTACAA
GATGAATATTCCGGTGGCGTCTCCGTCGTTGGTCCTCCGCCGGCGGTTTTCATTGGCCGT
GAGTGCGTCCGAGGTCTTGAGTCCCTTGTCGCTCTTCACTTAAGAGGTCAACTTGTTCCT
AAGCT
GenBank Accession BZ766726 [GenBank]
Graphic View Graphic view of gene At4g33040
Predicted Position of Insertion Chr4:15941111 - go to primer design
BLAST e Value 1e-160
Hit Clone Code (BAC ID) F26P21
Hit Gene Code At4g33040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Thioredoxin superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BZ766726 [GenBank]


Last Updated on Thursday, 10 June 2021 13:37