SimpleSearch - Line and FST details


Line specific information

 
Line ID 078B06
Vector Used pAC161
Line Availability available as T3 set from NASC (N407410)
Segregation Analysis 50:43:40
Confirmed for Hit At3g17910 At5g13610
Parent of DUPLO pair none
Parent of pair(s) 367, 1871

Gene hit At3g17910

 
Sequence (A. th genome BLAST matches underlined) 
>42-K016174-022-078-B06-8409
TGTCCTGTCATTTCCCGGACTGAAGCCTTTACATTGACTATTCCCGACATACTGATCTAT
GCTGACTCATTGCAATTCTCTGCATCGTCATGTAGACTAATTAAGTTTAATAAATGTCAG
ATTCCAGTGAGAATCTAAATGCTCGTAATTCTTTCATATAAGTGATCTGGCGACACTCTT
ATTGATTGTAAATGCATGCTGAGTACTGGCTACCATGCCCATGTCTTGGTTGAGATTTCT
CTTATTCCATTACCTGATTTCCTATCTTTTTCTCTTCCAAATGGTTGCTGAAGCTGAGAC
ATTTAATATTAATTGGTTGCTTTTCACTGATCAGACCCCTAAAGCTTTATTCATTACTTG
TTACCGCAGATCAAAACACTGGAGTATCAACTGCAACGGTTGAACATGGAACCAATAAAG
CTAAATATAGACCATCCTCTTGATAATAATCTCAATGCTTTATAATTTAGACGGGTTAGT
TGCAAGGGTGTCTTTGACGAGCAAAGGTCTATCTATTTGGGTCCACGGGCTATGGGATCC
TGCCCCCAATTAGGGGAGAGAAAACCATGGACTACCCACCTTTTTTTTTTCTCTGCAAAA
ATGTATATGCCCCCCCTTTTTAATAAAAAAGAAATTGGGGG
GenBank Accession AL937272 [GenBank]
Graphic View Graphic view of gene At3g17910
Predicted Position of Insertion Chr3:6134157 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MEB5
Hit Gene Code At3g17910 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Surfeit locus 1 cytochrome c oxidase biogenesis protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit LN713388 [GenBank]

Gene hit At5g13610

 
Sequence (A. th genome BLAST matches underlined) 
>02-K118892-0022-078-B06C-8409
TCGGATGAGCATTTCATTGAATTATCCTGAGGACGCATAAGTGGGAGTGAGTCTATTTAC
ATGGTAGTATTTCATTATGGATCGATTGTCTTGTTTAATGTAAGGGAACATGAGGTTGAT
GAATATCTTAAAGTAGTGGAGAGGCATGCCTCTGGGTTGCTTCCAGAAATGAGAAAAGAT
GGTGAGTTGCTTGCTTTTCTTTTGCGCTGTGTGCTGTTTTCGCAATGTTGCTTACTTTCT
CATATCTCTGGTTCTGTAAAACTGTAGAATATGAAGTAAGAGAGAATCCAAATCTGGACA
CATGGATGGAGGTAGGACGGGATTTTATCAGGTTGCAGTTCTTGAATACTGATGGGATCA
GAACCATAGGATGTGTTCTGGGCCAGAGTATTGCTCTGGATTACTATGGCCGGCAGGTAA
CCATGTCAAATCCTTACACATTGTATTCTGGAATGTGGAAAAATGAAAAGAGATATAACT
GTGTGTGAGCAATCTGTTTCTGTTATAGGTTGATGGTATGGAGGCAGAAT
GenBank Accession HG968704 [GenBank]
Graphic View Graphic view of gene At5g13610
Predicted Position of Insertion Chr5:4383764 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T6I14
Hit Gene Code At5g13610 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sporulation RMD1-like protein, putative (DUF155)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL937273 [GenBank]


Last Updated on 10.06.2021 13:37