GABI DUPLOdb - pair details


Details for pair 1871
  
  Pair Info Parent 1 Parent 2
Pair ID 1871    
Parent loci   At1g69380 [Araport] [TAIR] At5g13610 [Araport] [TAIR]
Gene Annotations   Protein of unknown function (DUF155) Protein of unknown function (DUF155);
Pair-related paper(s)  
Similarity (TAIRv10) 56.6 %    
Gap (TAIRv10) 18.1 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   117C02 / At1g69380 078B06 / At5g13610
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At1g69380 Graphic view of gene At5g13610
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 1871/1b1.30
NASC set ID N2102837
Assigned allele   117C02 078B06
Allele genotype in parent1   Hom  
Allele genotype in parent2     Het
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).
Observed phenotype additional mutation could be still segregating

 


Last Updated on Thursday, 06 December 2018 16:11