DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_069496c
Line Availability available from NASC (N681250) and ABRC (SALK_069496c)
Confirmed for Hit At5g53360
Parent of DUPLO pair 2788
Parent of pair(s) none

Gene hit At1g59620

 
Sequence (A. th genome BLAST matches underlined) 
CTTCAGCTGTTTGCATCTCATGTGGTGAACTGTGATTAGCAGCCCGGGCCGTCGACCAAT
GTNTTTTNTTGTNACTACTCTCTTGTACACTTACGTTTAAATAGTTCAGCATCTTCTAAT
TCTGCTTATTCGATGGTATATGAGATGCTTTTGCCCGATATATCCTCATTTATCTCATGT
GGATTAGCACTCCGATGCTAGAGGGTAACTCCCCTCCTCACTCAACTCCATGGAGATCTT
AAACCCTCATCAACTGTAGCCTCGTAAACCATACTTCGAATCCCCTATAACCACCAAGCT
CCTCGATAAACAAGAGAGATCTAAGTTTTGGATTCTTCAGCTTCCCCTCCATATCTGTTT
TATCACCCCCTTTTACGACCAGTCTGCGAGGTTTACTAGGAGATTTAGAGGTTTCATTTT
CTATCAAGTTCTCTTCTTCAGCTTTAAGAA
GenBank Accession ED596577 [GenBank]
Graphic View Graphic view of gene At1g59620
Predicted Position of Insertion Chr1:21904722 - go to primer design
BLAST e Value 1e-161
Hit Clone Code (BAC ID) T30E16
Hit Gene Code At1g59620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance protein (CC-NBS-LRR class) family
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g53360

 
Sequence (A. th genome BLAST matches underlined) 
GTCTAAAGTTACGGTAGGACTCATGCTTTAGTTTACTGTAATAATGGAAAATCGCAAGGC
ATCCAAGATAGTAATGCGTGCACGGAAACTC
GenBank Accession CC179468 [GenBank]
Graphic View Graphic view of gene At5g53360
Predicted Position of Insertion Chr5:21648647 - go to primer design
BLAST e Value 2e-21
Hit Clone Code (BAC ID) K19E1
Hit Gene Code At5g53360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation TRAF-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37