DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_112170
Line Availability available from NASC (N612170) and ABRC (SALK_112170)
Confirmed for Hit At2g27210
Parent of DUPLO pair 2309
Parent of pair(s) none

Gene hit At2g27210

 
Sequence (A. th genome BLAST matches underlined) 
>60-K118240-SALK_112170C-LBb3
TTTTGCCCGATTCGGAACACTATTGATTGACATCTGACGATCTAATAATTTCCTAGCTGC
TGTTGCACTTTCGGGTGTCCCATAACTAACACGGCGTCCCTCATTTTCAAATTGATCAAT
GGATAACTGTCTAACCATTCCACCTAAGGCTCCACCTGTTTCTGCAGCAACCACCACCTT
ACAAAGTTCCAAAAATAAATGCAAAACAAAAATCAGAAATTAGAGATGTAAACCACTGGT
AAATGAGCTGGAATTACGGTAAATGACAGATTTTTCTTGATAGAGTTAGATTGACTCACA
GCTCTATGATGAAGTCGAACCCCTGCAGGAATAACACTATTTGGTACTGCAGAATCAGGC
TTAATCAATGATAATGAAGGTTTTCCACTGGGCGTAGCCTCAGCACCACGATCCCTATCT
GGAAGTTCAACTTCCCCATTGACCTGTCGTGCCTTCGCAGCAGCTAATGTTGCACTGATA
GCCTCGGCTTCCGCAGCAGATGCTTCAACAAGATACTCCACACCCTTGCTGTTCTCCTAC
AATG
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At2g27210
Predicted Position of Insertion Chr2:11634069 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T22O13
Hit Gene Code At2g27210 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation BRI1 suppressor 1 (BSU1)-like 3
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g47070

 
Sequence (A. th genome BLAST matches underlined) 
AAAATAATGGAATGGATGAGGTAAGAATATACATACCTGAGCATCTTCACTAGAACTTGA
GGGTGACTGGTCAGATGCTGAATCTGAATT
GenBank Accession BZ378931 [GenBank]
Graphic View Graphic view of gene At2g47070
Predicted Position of Insertion Chr2:19338404 - go to primer design
BLAST e Value 1e-44
Hit Clone Code (BAC ID) F14M4
Hit Gene Code At2g47070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation squamosa promoter binding protein-like 1
Insertion Classification CDSi
Confirmation Status failed


Last Updated on Thursday, 10 June 2021 13:37