GABI DUPLOdb - pair details


Details for pair 1826
  
  Pair Info Parent 1 Parent 2
Pair ID 1826    
Parent loci   At4g17490 [Araport] [TAIR] At5g07580 [Araport] [TAIR]
Gene Annotations   ethylene responsive element binding factor 6 Integrase-type DNA-binding superfamily protein;
Pair-related paper(s)  
Similarity (TAIRv10) 34.3 %    
Gap (TAIRv10) 41.1 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   SALK_087356 / At4g17490 172B09 / At5g07580
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At4g17490 Graphic view of gene At5g07580
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 1826/1a3.01.1
NASC set ID N2102836
Assigned allele   SALK_087356 172B09
Allele genotype in parent1   Het  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11