GABI DUPLOdb - pair details


Details for pair 207
  
  Pair Info Parent 1 Parent 2
Pair ID 207    
Parent loci   At2g21040 [Araport] [TAIR] At1g20080 [Araport] [TAIR]
Gene Annotations   Calcium-dependent lipid-binding (CaLB domain) family protein Calcium-dependent lipid-binding (CaLB domain) family protein;
Pair-related paper(s)  
Similarity (TAIRv10) 14.5 %    
Gap (TAIRv10) 79.8 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   SALK_047290c / At2g21040 811C03 / At1g20080
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At2g21040 Graphic view of gene At1g20080
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 207/1a2.04
NASC set ID N2102772
Assigned allele   SALK_047290c 811C03
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11