GABI DUPLOdb - pair details


Details for pair 220
  
  Pair Info Parent 1 Parent 2
Pair ID 220    
Parent loci   At5g47380 [Araport] [TAIR] At1g21060 [Araport] [TAIR]
Gene Annotations   Protein of unknown function, DUF547 Protein of unknown function, DUF547;
Pair-related paper(s)  
Similarity (TAIRv10) 39.5 %    
Gap (TAIRv10) 25.9 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   745C07 / At5g47380 SALK_094518 / At1g21060
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g47380 Graphic view of gene At1g21060
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 220/1a1.10-1
NASC set ID N2102775
Assigned allele   745C07 SALK_094518
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11