GABI DUPLOdb - pair details


Details for pair 2455
  
  Pair Info Parent 1 Parent 2
Pair ID 2455    
Parent loci   At3g57800 [Araport] [TAIR] At2g42300 [Araport] [TAIR]
Gene Annotations   basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein;
Pair-related paper(s)  
Similarity (TAIRv10) 66.5 %    
Gap (TAIRv10) 23.7 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   521G06 / At3g57800 136D10 / At2g42300
Insertion classification   Promoter CDSi
Parent line's graphic view   Graphic view of gene At3g57800 Graphic view of gene At2g42300
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2455/1a1.03
NASC set ID N2102870
Assigned allele   521G06 136D10
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11