DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_016116
Line Availability available from NASC (N516116) and ABRC (SALK_016116)
Confirmed for Hit At1g05680 At2g16530
Parent of DUPLO pair none
Parent of pair(s) 72768

Gene hit At1g05680

 
Sequence (A. th genome BLAST matches underlined) 
TCATTGATGCTCTTATCAGAGCTACCTCCTTCAAAAACTGCCTCTTGAGTCAACACTTTC
CATTTCTCACCATTCTTTCTAATCTCTTTCCCATTCTCTCCCTCCATAACTTCTTCCACA
CTTCTCATAATCTCTTCTCTCCTCACAAACCCATCACCTTCTGCCTTAACCCTTACCCCA
ACCTTCCACACATCCTGCATGAGCTTAGCCTTCGGGGGCTGATCATTCCAGCGTGGCATA
GenBank Accession ED575883 [GenBank]
Graphic View Graphic view of gene At1g05680
Predicted Position of Insertion Chr1:1703362 - go to primer design
BLAST e Value 8e-36
Hit Clone Code (BAC ID) F3F20
Hit Gene Code At1g05680 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Uridine diphosphate glycosyltransferase 74E2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g16530

 
Sequence (A. th genome BLAST matches underlined) 
>57-K118240-SALK_016116C-R204
GCGTGGAACCCCTTGCTGCAACTNGGATGTATGCTTGCAAAATGGCGCCTTTATCTTCTG
AGGAGTTCCAGTTATCCGACATTGCAAGCCGTTTAGCCGGAGGTTCAGATGTTTTCTCCG
TTCATAAATCTAATATGACTCCTGTCGAGCATCGGTTTAAAGTGTGGCGAGCGGTGTTTC
TACTTCTTCTGATGGAGATCCATGTCTTGAGACGGCTTATAGAGTCATTCTATGTTTTCA
AATATAGCCCTTCTGCTCGGATGCACATTCTCGGTTATTTCGCAGGATTGTTGTAAGTCC
CTTAAGAAACTCCTTATATTATCATAGTTTGATTGTCTTTTTGTTTGTCGTTAATTTGTG
TTTTTATAGTTTCTATGTAACAGCTCCTTTGTCACTCTGCTCCAATATAGCTCCAGAGGT
AGCAGGATTCGTAGGAAATCAAGTGGCTGAGTTCATTGCTAATGGGAAAAGCCATACTTC
AGCACCTGAATTTAACTTGTTATCATCTATAAGTCCTTTGATGAAGCTTGGATCACTCCA
GTGGATTGGTGGAGCCATTTTTCTTTGG
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At2g16530
Predicted Position of Insertion Chr2:7164413 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F1P15
Hit Gene Code At2g16530 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37