DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_064292
Line Availability available from NASC (N564292) and ABRC (SALK_064292)
Confirmed for Hit At1g17050 At5g43380
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g17050

 
Sequence (A. th genome BLAST matches underlined) 
ATGGAGTAATAAACAAAAATTCATGCTTATTATTGCAAAATAAAAGTAACTCAATTTTTT
AGATACTTGTGAATGGTACTAGACCCAAATATAAATTGATCTGTGTTAAAATTCTATACA
TCTTGGTATTGAAAAGTGAAAACAACAAATTTCACATAAACAGTAAAAAAATTAAATCGA
AGTTTTGTAAATGGTCATATTGATTTATTTTATTTTTGGGACAAAAAATGGTAATATTTA
TACGCTGCATGCCGCCCCGTCCACACAACCATGCCTACGAGTAACCCAAACTGATCTGTG
GACTGAGTGAAGTCCAGAATGTCATCAACTACTTGAAAAGATAAACCGAGATTCTTCCCG
AACTGATACATTTGCTCTGCGACCTTGCTTTCGACTTTACTGAAAATTGCTGCTCCTTTG
GTGCT
GenBank Accession ED594560 [GenBank]
Graphic View Graphic view of gene At1g17050
Predicted Position of Insertion Chr1:5831308 - go to primer design
BLAST e Value 1e-117
Hit Clone Code (BAC ID) F6I1
Hit Gene Code At1g17050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation solanesyl diphosphate synthase 2
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g43380

 
Sequence (A. th genome BLAST matches underlined) 
>17-K117318-SALK_064292C-R210
CTTTTGGATTCTGGTTTCTATATTGCAGATACCTAGAAAACTAATACTTATATATCTTGT
TTTAATACATAATCATAATTGAATCAATTTAACTTGACATATCATTATAATATTGCTAGT
GTTAACAAAATATTAAAATGATGACTTACCCATGTTGTACCACCGAGTTAATGATATTTA
AATTTATATTAATGAAGATTCAAACTCGTCAAACCATATAACCCATACCGTGATATTTTA
AACTTTTTATAAGTTAAACGTTGATAATATTTTGAAGTTTTTATACACTTTAAATAGATC
AATTATAATATTTTAATTTTTTAAAAAGTTTAGAATTTATGATATCTGGTATAATTAAAC
GGTTTGACTAAAGAACCGAATTAAACTGAACAAATATTTAAATTTGGATGTTTGTTAAGT
TAGGATTCCTACTCACTCATATTTCTTTGGGTTCAATTTGGTCTTATTTATGAGATTTTG
GACACAAAGTTTAAGCTGATG
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At5g43380
Predicted Position of Insertion Chr5:17419862 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MWF20
Hit Gene Code At5g43380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation type one serine/threonine protein phosphatase 6
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37