GABI DUPLOdb - pair details


Details for pair 1383
  
  Pair Info Parent 1 Parent 2
Pair ID 1383    
Parent loci   At5g05250 [Araport] [TAIR] At3g56360 [Araport] [TAIR]
Gene Annotations   unknown protein unknown protein;
Pair-related paper(s)  
Similarity (TAIRv10) 52.5 %    
Gap (TAIRv10) 16.3 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   353F05 / At5g05250 530C12 / At3g56360
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g05250 Graphic view of gene At3g56360
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 1383/1a1.16.1
NASC set ID N2102817
Assigned allele   353F05 530C12
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 


Last Updated on Thursday, 06 December 2018 16:11