GABI DUPLOdb - pair details


Details for pair 2741
  
  Pair Info Parent 1 Parent 2
Pair ID 2741    
Parent loci   At5g40390 [Araport] [TAIR] At4g01970 [Araport] [TAIR]
Gene Annotations   Raffinose synthase family protein stachyose synthase;
Pair-related paper(s)  
Similarity (TAIRv10) 58.3 %    
Gap (TAIRv10) 13.6 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   106F01 / At5g40390 SALK_026853 / At4g01970
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g40390 Graphic view of gene At4g01970
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2741/1a3.13.1
NASC set ID N2102902
Assigned allele   106F01 SALK_026853
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11