GABI DUPLOdb - pair details


Details for pair 2744
  
  Pair Info Parent 1 Parent 2
Pair ID 2744    
Parent loci   At5g59750 [Araport] [TAIR] At2g22450 [Araport] [TAIR]
Gene Annotations   DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II riboflavin biosynthesis protein, putative;
Pair-related paper(s)  
Similarity (TAIRv10) 59.1 %    
Gap (TAIRv10) 22.8 %    
Component 3    
Genetically unlinked Yes    
Assigned allele   SALK_039631c / At5g59750 SALK_073421 / At2g22450
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g59750 Graphic view of gene At2g22450
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2744/1a1.05.1
NASC set ID N2102903
Assigned allele   SALK_039631c SALK_073421
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 


Last Updated on Thursday, 06 December 2018 16:11