GABI DUPLOdb - pair details


Details for pair 435
  
  Pair Info Parent 1 Parent 2
Pair ID 435    
Parent loci   At3g29180 [Araport] [TAIR] At1g59650 [Araport] [TAIR]
Gene Annotations   Protein of unknown function (DUF1336) Protein of unknown function (DUF1336);
Pair-related paper(s)  
Similarity (TAIRv10) 58.8 %    
Gap (TAIRv10) 10 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   SALK_064247c / At3g29180 350C02 / At1g59650
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At3g29180 Graphic view of gene At1g59650
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 435/1a2.01.2
NASC set ID N2102918
Assigned allele   SALK_064247c 350C02
Allele genotype in parent1   Hom  
Allele genotype in parent2     Het
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 


Last Updated on Thursday, 06 December 2018 16:11