DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_007247c
Line Availability available from NASC (N653008) and ABRC (SALK_007247c)
Confirmed for Hit At1g20803 At1g20810
Parent of DUPLO pair none
Parent of pair(s) 217

Gene hit At1g20803

 
Sequence (A. th genome BLAST matches underlined) 
>59-K119130-SALK_007247C-R210
AACTCAATGATCCATCTGTTTTCCAAGATATCTTTCCCGTTTTTCTTGAACAAGCTCTGA
TCATATGGTGAGATTCCACTAGTCAATCTCATAACTTTGCTTATAGAGGAGACACGTTTA
TCATCATCATCATCATCGTTAACCATCGTCATCATGTCGACGTCCTCCTTCTCATCTAGT
TCCATCGAAGAGGATGCCGTCAAAGACGGTTTGGACTGACACAGGTCTCGTTTACCATCG
TACCACCGTGGAATCCAACCCATGACTCCCCACTTGGTAGCTTTAAAGTCATATCCATGA
ATCACTCCGTCGTCGTTACAGTCCTTCTTACATACAGTTTTGAAATAAGGATCGTCGGAT
ATATGCGAGTTGATAGATCGATCCGTGCATTGCATCATTGCCAGAGATTTTGGATCTAAT
TTGAAGAGAATCTCTTCAAAGATATGAAAAGGTAATCCATCCATGATTGATCTAATTAAT
AAGAAAAAGAGACAAAACAAGATTAGGGCTTTTTGCTCCGTTCCGTGATGGTGACTATTC
CAGAAGTTTTGGTGATGTTATAGTAGATATGATGTATTTATAGACGTAGATTATTTGCGC
TTTTACATATTAAAAAGGAAAGATTT
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At1g20803
Predicted Position of Insertion Chr1:7231143 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F2D10
Hit Gene Code At1g20803 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box/associated interaction domain protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Other FSTs Supporting this Hit queueing for submission to ENA/GenBank

Gene hit At1g20810

 
Sequence (A. th genome BLAST matches underlined) 
TAGGTCACTTTGTTGCTCTATGTTTAACTCATAAGTAACTACGCGCTGCAACAACGTACG
TGATTTTATTAGCTCCTATACCCGACACAAGCATCTATGACAACATTTTGTAGTATACTC
TTTCATCGAAAAACGGAGCTTTCCTCATATACAATTTGTAGTATGTTCTCACCGGTATCT
CATTCCTTCCTTTCTGACCAGAACCACCTACATGAGGAACTATCACCATTCTCTGCTGCA
ACTGACATCATGTCAAAACTACTTATATGTAACTACGTGTAGTACGAATAAGAGAGCTAA
AATGGTGTACTGTTTCTGACCGTGCCTCCTACTTTCATTCCTTCAGTAATGAAATACATT
GCTGGATGATGTTTTGGTGCATCCTGACGCATACAAAACCCATTTGGATTTCAACGAATG
CACGNGNNNNNNNACCA
GenBank Accession CC051413 [GenBank]
Graphic View Graphic view of gene At1g20810
Predicted Position of Insertion Chr1:7233332 - go to primer design
BLAST e Value 2e-78
Hit Clone Code (BAC ID) F2D10
Hit Gene Code At1g20810 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37