GABI DUPLOdb - pair details


Details for pair 1123
  
  Pair Info Parent 1 Parent 2
Pair ID 1123    
Parent loci   At5g11470 [Araport] [TAIR] At3g15605 [Araport] [TAIR]
Gene Annotations   bromo-adjacent homology (BAH) domain-containing protein nucleic acid binding;
Pair-related paper(s)  
Similarity (TAIRv10) 33.9 %    
Gap (TAIRv10) 38.2 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   484B11 / At5g11470 470E02 / At3g15605
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g11470 Graphic view of gene At3g15605
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 1123/2a1.24.01
NASC set ID N2102805
Assigned allele   484B11 470E02
Allele genotype in parent1   Het  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11