GABI DUPLOdb - pair details


Details for pair 25
  
  Pair Info Parent 1 Parent 2
Pair ID 25    
Parent loci   At4g14760 [Araport] [TAIR] At1g03080 [Araport] [TAIR]
Gene Annotations   kinase interacting (KIP1-like) family protein kinase interacting (KIP1-like) family protein;
Pair-related paper(s)  
Similarity (TAIRv10) 55.9 %    
Gap (TAIRv10) 8.7 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   SALK_142729 / At4g14760 106H05 / At1g03080
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At4g14760 Graphic view of gene At1g03080
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 25/1a1.12.2
NASC set ID N2102576
Assigned allele   SALK_142729 106H05
Allele genotype in parent1   Hom  
Allele genotype in parent2     Het
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11