When using GABI-Kat lines, please cite: Kleinboelting et al. 2012.

If you know a publication which did rely on GABI-Kat material but is not listed below, please send an e-mail to
infogabi-kat.de - thanks!

The list below is split into six categories:
(i) publications from the GABI-Kat team itself,
(ii) publications with contribution from GABI-Kat co-workers,
(iii) publications using GABI-Kat material,
(iv) publications referring to the GABI-Kat population,
(v) publications referring to the GABI-Kat population and the DUPLO collection, and
(vi) patents using GABI-Kat material.

Since April 2013, we also display links between publications and the lines (insertion alleles) that have been analysed, and mention the allele designation (IF these data have been extracted from the respective publication).
There is also a Google Scholar profile.

Publications of GABI-Kat   [17] Pucker B, Kleinbölting N, Weisshaar B. Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis. BMC Genomics. 2021 22 (1):599 [PubMed] [Website] [GK-line 082G09] [GK-line 040A12] [GK-line 050B11]   [16] Kleinboelting N, Huep G, Weisshaar, B. Enhancing the GABI-Kat Arabidopsis thaliana T-DNA insertion mutant database by incorporating Araport11 annotation. Plant Cell Physiol. 2017 58 (1):e7 [PubMed]   [15] Kleinboelting N, Huep G, Appelhagen I, Viehoever P, Li Y, Weisshaar B. The structural features of thousands of T-DNA insertion sites are consistent with a double-strand break repair based insertion mechanism. Mol Plant. 2015 8 (11):1651-1664 [PubMed] [GK-line 144F03] [GK-allele tt6-6] [GK-allele tt6-6]   [14] Appelhagen I, Thiedig K, Nordholt N, Schmidt N, Huep G, Sagasser M, Weisshaar B. Update on transparent testa mutants from Arabidopsis thaliana: characterisation of new alleles from an isogenic collection. Planta. 2014 240 :955-970 [PubMed] [GK-allele tt4-15] [GK-allele tt7-7] [GK-allele tt15-3] [GK-allele tt15-4] [GK-allele tt15-5] [GK-allele aha10-6] [GK-allele tt10-7] [GK-allele tt10-8] [GK-allele tt16-4] [GK-allele tt16-5] [GK-allele ttg1-21] [GK-allele ttg1-22] [GK-allele ttg2-5] [GK-allele tt12-2]   [13] Huep G, Kleinboelting N and Weisshaar B. An easy-to-use primer design tool to address paralogous loci and T-DNA insertion sites in the genome of Arabidopsis thaliana. Plant Methods. 2014 10 :28 [PubMed]   [12] Huep G, Kleinbölting N, Appelhagen I, Viehöver P, Weisshaar B. Insertionslinien als Werkzeuge für funktionelle Genomforschung. BIOspektrum. 2013 6 :639-641 [Website]   [11] Bolle C, Huep G, Kleinbölting N, Haberer G, Mayer K, Leister D, Weisshaar B. GABI-DUPLO: A Collection of Double Mutants to Overcome Genetic Redundancy in Arabidopsis thaliana. Plant J. 2013 75 (1):157-171 [PubMed]   [10] Kleinboelting N, Huep G, Kloetgen A, Viehoever P and Weisshaar B. GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Res. 2012 40 (D1):D1211-D1215 [PubMed]   [9] Stracke R, Huep G, Weisshaar B. Use of mutants from T-DNA insertion populations generated by high-throughput screening. In: Handbook of Plant Mutation Screening, Eds: K.Meksem, G.Kahl. Book Chapter. 2010 1 (1):31-54 [Website]   [8] Huep G, Weisshaar B. Horizontaler Transfer von chromosomalen bakteriellen Genen aus Agrobakterien zu Pflanzen. GenomXPress. 2008 8 :17-19 [Website]   [7] Ulker B, Li Y, Rosso MG, Logemann E, Somssich IE and Weisshaar B. T-DNA-mediated transfer of Agrobacterium tumefaciens chromosomal DNA into plants. Nat Biotechnol. 2008 26 :1015-1017 [PubMed] [GK-allele AchrDNA] [GK-allele AchrDNA] [GK-allele AchrDNA]   [6] Li Y, Rosso MG, Viehoever P, Weisshaar B. GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Res. 2007 35 (Database issue):D874-878 [PubMed]   [5] Li Y, Rosso MG, Ulker B, Weisshaar B. Analysis of T-DNA insertion site distribution patterns in Arabidopsis thaliana reveals special features of genes without insertions. Genomics. 2006 87 (5):645-652 [PubMed]   [4] Weisshaar B, Saedler H. Freier Zugang zu genetischen Pflanzenressourcen. GenomXPress. 2005 3 :7-9 [Website]   [3] Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B. An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Mol Biol. 2003 53 (1-2):247-259 [PubMed] [GK-allele tt8-GK01] [GK-allele ag-GK01] [GK-allele ag-GK02] [GK-allele tfl1-GK01] [GK-allele tfl1-GK02] [GK-allele tfl1-GK03] [GK-allele tfl1-GK04] [GK-allele wax2-GK01] [GK-allele wax2-GK02] [GK-allele dfr-GK01] [GK-allele chs-GK01] [GK-allele chi-GK01] [GK-allele f3h-GK01] [GK-allele tt7-6]   [2] Strizhov N, Li Y, Rosso MG, Viehoever P, Dekker KA, Weisshaar B. High-throughput generation of sequence indexes from T-DNA mutagenized Arabidopsis thaliana lines. BioTechniques. 2003 35 (6):1164-1168 [PubMed]   [1] Li Y, Rosso MG, Strizhov N, Viehoever P, Weisshaar B. GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana. Bioinformatics. 2003 19 (11):1441-1442 [PubMed]   Publications with contribution from GABI-Kat co-workers   [22] Appelhagen I, Nordholt N, Seidel T, Spelt K, Koes R, Quattrochio F, Sagasser M, Weisshaar B. Transparent Testa 13 is a tonoplast P3A -ATPase required for vacuolar deposition of proanthocyanidins in Arabidopsis thaliana seeds. Plant J. 2015 82 (5):840-849 [PubMed] [GK-allele tt13-6] [GK-allele tt13-7] [GK-allele tt13-8] [GK-allele tt13-9]   [21] Appelhagen I, Jahns O, Bartelniewoehner L, Sagasser M, Weisshaar B and Stracke R. Leucoanthocyanidin Dioxygenase in Arabidopsis thaliana: characterization of mutant alleles and regulation by MYB-BHLH-TTG1 transcription factor complexes. Gene. 2011 484 (1-2):61-68 [PubMed] [GK-allele gl3-3] [GK-allele egl3-gk] [GK-allele myc1-gk] [GK-allele tt8-6]   [20] Stracke R, Jahns O, Keck M, Tohge T, Niehaus K, Fernie AR and Weisshaar B. Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation. New Phytol. 2010 188 (4):985-1000 [PubMed] [GK-allele tt5-2] [GK-allele tt7-6] [GK-allele myb111-1]   [19] Armbruster U, Zuhlke J, Rengstl B, Kreller R, Makarenko E, Ruhle T, Schunemann D, Jahns P, Weisshaar B, Nickelsen J and Leister D. The Arabidopsis thylakoid protein PAM68 is required for efficient D1 biogenesis and photosystem II assembly. Plant Cell. 2010 22 (10):3439-3460 [PubMed] [GK-allele pam68-1]   [18] Stracke R, De Vos RC, Bartelniewoehner L, Ishihara H, Sagasser M, Martens S and Weisshaar B. Metabolomic and genetic analyses of flavonol synthesis in Arabidopsis thaliana support the in vivo involvement of leucoanthocyanidin dioxygenase. Planta. 2009 229 (2):427-445 [PubMed] [GK-allele fls2] [GK-allele fls5]   [17] Stracke R, Ishihara H, Huep G, Barsch A, Mehrtens F, Niehaus K, Weisshaar B Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling. Plant J. 2007 50 (4):660-77 [PubMed] [GK-allele myb111-1]   [16] Gigolashvili T, Berger B, Mock HP, Muller C, Weisshaar B, Flugge UI. The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana. Plant J. 2007 50 (5):886-901 [PubMed] [GK-allele hig1-1]   [15] Xing S, Rosso MG, Zachgo S ROXY1, a member of the plant glutaredoxin family, is required for petal development in Arabidopsis thaliana. Development. 2005 132 (7):1555-65 [PubMed] [GK-allele roxy1-3] [GK-allele roxy1-2]   [14] Kanter U, Usadel B, Guerineau F, Li Y, Pauly M, Tenhaken R The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta. 2005 221 (2):243-54 [PubMed] [GK-allele Dmiox1-1] [GK-allele Dmiox2-1]   [13] Casazza AP, Rossini S, Rosso MG, Soave C Mutational and expression analysis of ELIP1 and ELIP2 in Arabidopsis thaliana. Plant Mol Biol. 2005 58 (1):41-51 [PubMed] [GK-allele elip1-1] [GK-allele elip2-1] [GK-allele elip2-2]   [12] Sarnowski TJ, Rios G, Jasik J, Swiezewski S, Kaczanowski S, Li Y, Kwiatkowska A, Pawlikowska K, Kozbial M, Kozbial P, Koncz C, Jerzmanowski A SWI3 Subunits of Putative SWI/SNF Chromatin-Remodeling Complexes Play Distinct Roles during Arabidopsis Development. Plant Cell. 2005 17 (9):2454-72 [PubMed] [GK-allele atswi3b-2]   [11] Witte CP, Rosso MG, Romeis T Identification of Three Urease Accessory Proteins That Are Required for Urease Activation in Arabidopsis. Plant Physiol. 2005 139 (3):1155-62 [PubMed] [GK-allele ureD-2] [GK-allele ureG-1] [GK-allele ureG-2]   [10] Niewiadomski P, Knappe S, Geimer S, Fischer K, Schulz B, Unte US, Rosso MG, Ache P, Flügge UI, Schneider A. The Arabidopsis plastidic glucose 6-phosphate/phosphate translocator GPT1 is essential for pollen maturation and embryo sac development. Plant Cell. 2005 17 (3):760-75 [PubMed] [GK-allele gpt2-1]   [9] Carrari F, Coll-Garcia D, Schauer N, Lytovchenko A, Palacios-Rojas N, Balbo I, Rosso M, Fernie AR. Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiol. 2005 137 (1):70-82 [PubMed] [GK-allele adk1-1]   [8] Pan X, Li Y, Stein L. Site preferences of insertional mutagenesis agents in Arabidopsis. Plant Physiol. 2005 137 (1):168-75 [PubMed]   [7] Jakoby M, Wang HY, Reidt W, Weisshaar B, Bauer P. FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana. FEBS Lett. 2004 577 (3):528-534 [PubMed] [GK-allele fru-G108]   [6] Hörmann F, Küchler M, Sveshnikov D, Oppermann U, Li Y, Soll J. Tic32, an essential component in chloroplast biogenesis. J Biol Chem. 2004 279 (33):34756-62 [PubMed] [GK-allele tic32-kln]   [5] Li W, Chen C, Markmann-Mulisch U, Timofejeva L, Schmelzer E, Ma H, Reiss B. The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis. Proc Natl Acad Sci USA. 2004 101 (29):10596-10601 [PubMed] [GK-allele atrad51-1]   [4] Usadel B, Kuschinsky AM, Rosso MG, Eckermann N, Pauly M. RHM2 is involved in mucilage pectin synthesis and is required for the development of the seed coat in Arabidopsis. Plant Physiol. 2004 134 (1):286-295 [PubMed] [GK-allele rhm2-1]   [3] Dekker KA, Soerensen TR, Weisshaar B, Saedler H. Functional Genomic Tools for Arabidopsis available at the MPIZ. Biotechnologia. 2003 4 (63):19-31 [Website]   [2] Jacobs AK, Lipka V, Burton RA, Panstruga R, Strizhov N, Schulze-Lefert P, Fincher GB. An Arabidopsis Callose Synthase, GSL5, Is Required for Wound and Papillary Callose Formation. Plant Cell. 2003 15 (11):2503-13 [PubMed] [GK-allele gsl5-1]   [1] Olmos E, Reiss B, Dekker K. The ekeko mutant demonstrates a role for tetraspanin-like protein in plant development. Biochem Biophys Res Commun. 2003 310 (4):1054-61 [PubMed] [GK-allele ekeko-2]   Publications using GABI-Kat material   [765] Sakamoto Y, Kawamura A, Suzuki T, Segami S, Maeshima M, Polyn S, De Veylder L, Sugimoto K. Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells. Plant Cell. 2022 [Epub ahead of print]. [PubMed] [GK-allele hag3-1] [GK-allele yuc3]   [764] Lüdke D, Roth C, Kamrad SA, Messerschmidt J, Hartken D, Appel J, Hörnich BF, Yan Q, Kusch S, Klenke M, Gunkel A, Wirthmueller L, Wiermer M. Functional requirement of the Arabidopsis importin-α nuclear transport receptor family in autoimmunity mediated by the NLR protein SNC1. Plant J. 2021 105 (4):994-1009 [PubMed] [GK-allele imp-α6-1]   [763] Grunewald S, Marillonnet S, Hause G, Haferkamp I, Neuhaus HE, Veß A, Hollemann T, Vogt T. The Tapetal Major Facilitator NPF2.8 Is Required for Accumulation of Flavonol Glycosides on the Pollen Surface in Arabidopsis thaliana. Plant Cell. 2020 32 (5):1727-1748 [PubMed] [GK-allele tt12-2]   [762] Ung H, Karia P, Ebine K, Ueda T, Yoshioka K, Moeder W. Triphosphate Tunnel Metalloenzyme Function in Senescence Highlights a Biological Diversification of This Protein Superfamily. Plant Physiol. 2017 175 (1):473-485 [PubMed] [GK-allele ttm1-2]   [761] Schertl P, Danne L, Braun HP. 3-Hydroxyisobutyrate Dehydrogenase Is Involved in Both, Valine and Isoleucine Degradation in Arabidopsis thaliana. Plant Physiol. 2017 175 (1):51-61 [PubMed] [GK-allele ƊHDH1-2] [GK-allele ƊHDH1-6] [GK-allele ƊHDH1-3]   [760] Rudnik R, Bulcha JT, Reifschneider E, Ellersiek U, Baier M. Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases. BMC Plant Biol. 2017 17 (1):144 [PubMed] [GK-allele rap24g-1] [GK-allele rap24h-1]   [759] Duan CG, Wang X, Zhang L, Xiong X, Zhang Z, Tang K, Pan L, Hsu CC, Xu H, Tao WA, Zhang H, Zhu JK. A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis. Proc Natl Acad Sci USA. 2017 114 (35):E7377-E7384 [PubMed] [GK-allele aipp3-1]   [758] Moussu S, Doll NM, Chamot S, Brocard L, Creff A, Fourquin C, Widiez T, Nimchuk ZL, Ingram G. ZHOUPI and KERBEROS Mediate Embryo/Endosperm Separation by Promoting the Formation of an Extracuticular Sheath at the Embryo Surface. Plant Cell. 2017 29 (7):1642-1656 [PubMed] [GK-allele krs-1] [GK-allele zou-4]   [757] Ufer G, Gertzmann A, Gasulla F, Röhrig H, Bartels D. Identification and characterization of the phosphatidic acid-binding A. thaliana phosphoprotein PLDrp1 that is regulated by PLDα1 in a stress-dependent manner. Plant J. 2017 92 (2):276-290 [PubMed] [GK-allele pldrp1-1]   [756] Creighton MT, Kolton A, Kataya ARA, Maple-Grødem J, Averkina IO, Heidari B, Lillo C. Methylation of protein phosphatase 2A-Influence of regulators and environmental stress factors. Plant Cell Environ. 2017 40 (10):2347-2358 [PubMed] [GK-allele ptpa-ox] [GK-allele pme1-1]   [755] Kataya ARA, Creighton MT, Napitupulu TP, Sætre C, Heidari B, Ruoff P, Lillo C. PLATINUM SENSITIVE 2 LIKE impacts growth, root morphology, seed set, and stress responses. PLoS ONE. 2017 12 (7):e0180478 [PubMed] [GK-allele pp4-1_4]   [754] Thieme M, Lanciano S, Balzergue S, Daccord N, Mirouze M, Bucher E. Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding. Genome Biol. 2017 18 (1):134 [PubMed] [GK-allele tt6-2]   [753] Hartings S, Paradies S, Karnuth B, Eisfeld S, Mehsing J, Wolff C, Levey T, Westhoff P, Meierhoff K. The DnaJ-Like Zinc-Finger Protein HCF222 Is Required for Thylakoid Membrane Biogenesis in Plants. Plant Physiol. 2017 174 (3):1807-1824 [PubMed] [GK-allele hcf222-2]   [752] Li D, Palanca AMS, Won SY, Gao L, Feng Y, Vashisht AA, Liu L, Zhao Y, Liu X, Wu X, Li S, Le B, Kim YJ, Yang G, Li S, Liu J, Wohlschlegel JA, Guo H, Mo B, Chen X, Law JA. The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status. eLIFE. 2017 6 :e19893 [PubMed] [GK-allele mbd7-3]   [751] Huang HY, Chang KY, Wu SJ. High irradiance sensitive phenotype of Arabidopsis hit2/xpo1a mutant is caused in part by nuclear confinement of AtHsfA4a. Biol Plantarum. 2017 :epub ahead of print [Website] [GK-allele hsfa4a-1]   [750] Ruzicka K, Zhang M, Campilho A, Bodi Z, Kashif M, Saleh M, Eeckhout D, El-Showk S, Li H, Zhong S, De Jaeger G, Mongan NP, Hejatko J, Helariutta Y, Fray RG. Identification of factors required for m6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI. New Phytol. 2017 215 (1):157-172 [PubMed] [GK-allele hakai‐1]   [749] Synek L, Vukašinović N, Kulich I, Hála M, Aldorfová K, Fendrych M, Žárský V. EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen. Plant Physiol. 2017 174 (1):223-240 [PubMed] [GK-allele exo70A2-OX] [GK-allele exo70C1-1] [GK-allele exo70C1-2] [GK-allele exo70H3]   [748] Zhao X, Bramsiepe J, Van Durme M, Komaki S, Prusicki MA, Maruyama D, Forner J, Medzihradszky A, Wijnker E, Harashima H, Lu Y, Schmidt A, Guthörl D, Logroño RS, Guan Y, Pochon G, Grossniklaus U, Laux T, Higashiyama T, Lohmann JU, Nowack MK, Schnittger A. RETINOBLASTOMA RELATED1 mediates germline entry in Arabidopsis. Science. 2017 356 :6336 [PubMed] [GK-allele krp7]   [747] Schaefer E, Belcram K, Uyttewaal M, Duroc Y, Goussot M, Legland D, Laruelle E, de Tauzia-Moreau ML, Pastuglia M, Bouchez D. The preprophase band of microtubules controls the robustness of division orientation in plants. Science. 2017 356 (6334):186-189 [PubMed] [GK-allele trm6-1]   [746] Pavicic M, Mouhu K, Wang F, Bilicka M, Chovanček E, Himanen K. Genomic and Phenomic Screens for Flower Related RING Type Ubiquitin E3 Ligases in Arabidopsis. Front Plant Sci. 2017 8 :416 [PubMed] [GK-line 299B05] [GK-line 931H12] [GK-line 004G05] [GK-line 847E06] [GK-line 822A07] [GK-line 287D02] [GK-line 018G06] [GK-line 500F07] [GK-line 195A05] [GK-line 250G03] [GK-line 476A11] [GK-line 479B03]   [745] Agorio A, Giraudat J, Bianchi MW, Marion J, Espagne C, Castaings L, Lelièvre F, Curie C, Thomine S, Merlot S. Phosphatidylinositol 3-phosphate-binding protein AtPH1 controls the localization of the metal transporter NRAMP1 in Arabidopsis. Proc Natl Acad Sci USA. 2017 114 (16):E3354-E3363 [PubMed] [GK-allele atph1-2]   [744] Scholz SS, Malabarba J, Reichelt M, Heyer M, Ludewig F, Mithöfer A. Evidence for GABA-Induced Systemic GABA Accumulation in Arabidopsis upon Wounding. Front Plant Sci. 2017 8 :388 [PubMed] [GK-allele pop2-5]   [743] Zhang Y, Li X, Yang S, Feng X. Identification of ZOUPI Orthologs in Soybean Potentially Involved in Endosperm Breakdown and Embryogenic Development. Front Plant Sci. 2017 8 :139 [PubMed] [GK-allele zou-4]   [742] Sun J, Wang H, Ren L, Chen S, Chen F, Jiang J. CmFTL2 is involved in the photoperiod- and sucrose-mediated control of flowering time in chrysanthemum. Hortic Res. 2017 15 :17001 [PubMed] [GK-allele ft-10]   [741] Rissel D, Heym PP, Thor K, Brandt W, Wessjohann LA, Peiter E. No Silver Bullet - Canonical Poly(ADP-Ribose) Polymerases (PARPs) Are No Universal Factors of Abiotic and Biotic Stress Resistance of Arabidopsis thaliana. Front Plant Sci. 2017 8 :59 [PubMed] [GK-allele parp1-1] [GK-allele parp1-2] [GK-allele parp1-3] [GK-allele parp2-1]   [740] Agorio A, Durand S, Fiume E, Brousse C, Gy I, Simon M, Anava S, Rechavi O, Loudet O, Camilleri C, Bouché N. An Arabidopsis Natural Epiallele Maintained by a Feed-Forward Silencing Loop between Histone and DNA. PLoS Genet. 2017 13 (1):e1006551 [PubMed] [GK-allele tad3-ko1]   [739] Corrales AR, Carrillo L, Lasierra P, Nebauer SG, Dominguez-Figueroa J, Renau-Morata B, Pollmann S, Granell A, Molina RV, Vicente-Carbajosa J, Medina J. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ. 2017 40 (5):748-764 [PubMed] [GK-allele cdf3-1]   [738] Boruc J, Weimer AK, Stoppin-Mellet V, Mylle E, Kosetsu K, Cedeño C, Jaquinod M, Njo M, De Milde L, Tompa P, Gonzalez N, Inzé D, Beeckman T, Vantard M, Van Damme D. Phosphorylation of MAP65-1 by Arabidopsis Aurora Kinases Is Required for Efficient Cell Cycle Progression. Plant Physiol. 2017 173 (1):582-599 [PubMed] [GK-allele map65-1-3]   [737] Gimeno-Ferrer F, Pastor-Cantizano N, Bernat-Silvestre C, Selvi-Martínez P, Vera-Sirera F, Gao C, Perez-Amador MA, Jiang L, Aniento F, Marcote MJ. α2-COP is involved in early secretory traffic in Arabidopsis and is required for plant growth. J Exp Bot. 2017 68 (3):391-401 [PubMed] [GK-allele α2-cop-3]   [736] Carella P, Kempthorne CJ, Wilson DC, Isaacs M, Cameron RK. Exploring the role of DIR1, DIR1-like and other lipid transfer proteins during systemic immunity in Arabidopsis. Phys Mol Plant Pat. 2017 95 (1):49-57 [Website] [GK-allele dir1-2] [GK-allele ltp2-1]   [735] Kitamura S, Oono Y, Narumi I. Arabidopsis pab1, a mutant with reduced anthocyanins in immature seeds from banyuls, harbors a mutation in the MATE transporter FFT. Plant Mol Biol. 2016 90 (1-2):7-18 [PubMed] [GK-allele tt12-2]   [734] Molesini B, Zanzoni S, Mennella G, Francese G, Losa A, L Rotino G, Pandolfini T. The Arabidopsis N-Acetylornithine Deacetylase Controls Ornithine Biosynthesis via a Linear Pathway with Downstream Effects on Polyamine Levels. Plant Cell Physiol. 2016 58 (1):130-144 [PubMed] [GK-allele naod-1]   [733] Glab N, Oury C, Guérinier T, Domenichini S, Crozet P, Thomas M, Vidal J, Hodges M. The impact of Arabidopsis thaliana SNF1-Related-Kinase1 (SnRK1)-Activating Kinase (SnAK) 1 and 2 on SnRK1 phosphorylation status: Characterisation of a SnAK double mutant. Plant J. 2016 89 (5):1031-1041 [PubMed] [GK-allele snak2-1]   [732] Pfalz M, Mukhaimar M, Perreau F, Kirk J, Hansen CI, Olsen CE, Agerbirk N, Kroymann J. Methyl Transfer in Glucosinolate Biosynthesis Mediated by Indole Glucosinolate O-Methyltransferase 5. Plant Physiol. 2016 172 (4):2190-2203 [PubMed] [GK-allele igmt5]   [731] Nath K, Wessendorf RL, Lu Y. A Nitrogen-Fixing Subunit Essential for Accumulating 4Fe-4S-Containing Photosystem I Core Proteins. Plant Physiol. 2016 172 (4):2459-2470 [PubMed] [GK-allele nfu3-1] [GK-allele nfu3-2]   [730] Tedeschi F, Rizzo P, Rutten T, Altschmied L, Bäumlein H. RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol. 2016 213 (4):1909-1924 [PubMed] [GK-allele rdk2-2]   [729] Babiychuk E, Hoang KT, Vandepoele K, Van De Slijke E, Geelen D, De Jaeger G, Obokata J, Kushnir S. The mutation nrpb1-A325V in the largest subunit of RNA polymerase II suppresses compromised growth of Arabidopsis plants deficient in a function of the general transcription factor IIF. Plant J. 2016 89 (4):730-745 [PubMed] [GK-allele man1-2]   [728] Hauenstein M, Christ B, Das A, Aubry S, Hörtensteiner S. A Role for TIC55 as a Hydroxylase of Phyllobilins, the Products of Chlorophyll Breakdown during Plant Senescence. Plant Cell. 2016 28 (10):2510-2527 [PubMed] [GK-allele tic32-1] [GK-allele tic62-1]   [727] Röhrig S, Schröpfer S, Knoll A, Puchta H. The RTR Complex Partner RMI2 and the DNA Helicase RTEL1 Are Both Independently Involved in Preserving the Stability of 45S rDNA Repeats in Arabidopsis thaliana. PLoS Genet. 2016 12 (10):e1006394 [PubMed] [GK-allele rmi2-1] [GK-allele mus81-1]   [726] Riboni M, Robustelli Test A, Galbiati M, Tonelli C, Conti L. ABA-dependent control of GIGANTEA signalling enables drought escape via up-regulation of FLOWERING LOCUS T in Arabidopsis thaliana. J Exp Bot. 2016 67 (22):6309-6322 [PubMed] [GK-allele ft-10]   [725] Schulz E, Tohge T, Zuther E, Fernie AR, Hincha DK. Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana. SCIENTIFIC REPORTS. 2016 6 :34027 [PubMed] [GK-allele tt7-6]   [724] Joly-Lopez Z, Hoen DR, Blanchette M, Bureau TE. Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements. Mol Biol Evol. 2016 33 (8):1937-1956 [PubMed] [GK-allele mug1-1]   [723] Wang L, Clarke LA, Eason RJ, Parker CC, Qi B, Scott RJ, Doughty J. PCP-B class pollen coat proteins are key regulators of the hydration checkpoint in Arabidopsis thaliana pollen-stigma interactions. New Phytol. 2016 213 (2):764-777 [PubMed] [GK-allele pcp-bδ-1]   [722] Tarasenko VI, Katyshev AI, Yakovleva TV, Garnik EY, Chernikova VV, Konstantinov YM, Koulintchenko MV. RPOTmp, an RNA polymerase from Arabidopsis with dual targeting, plays an important role in mitochondria, but not in chloroplasts. J Exp Bot. 2016 67 (19):5657-5669 [PubMed] [GK-allele rpotmp-1]   [721] Suetsugu N, Takemiya A, Kong SG, Higa T, Komatsu A, Shimazaki K, Kohchi T, Wada M. RPT2/NCH1 subfamily of NPH3-like proteins is essential for the chloroplast accumulation response in land plants. Proc Natl Acad Sci USA. 2016 113 (37):10424-10429 [PubMed] [GK-allele nch1-2]   [720] Press MO, Lanctot A, Queitsch C. PIF4 and ELF3 Act Independently in Arabidopsis thaliana Thermoresponsive Flowering. PLoS ONE. 2016 11 (8):e0161791 [PubMed] [GK-allele elf3-200]   [719] Weng JK, Ye M, Li B, Noel JP. Co-evolution of Hormone Metabolism and Signaling Networks Expands Plant Adaptive Plasticity. Cell. 2016 166 (4):881-893 [PubMed] [GK-allele abh2-2]   [718] Weimer AK, Biedermann S, Harashima H, Roodbarkelari F, Takahashi N, Foreman J, Guan Y, Pochon G, Heese M, Van Damme D, Sugimoto K, Koncz C, Doerner P, Umeda M, Schnittger A. The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis. EMBO J. 2016 35 (19):2068-2086 [PubMed] [GK-allele cycb1;4-1]   [717] Alassimone J, Fujita S, Doblas VG, van Dop M, Barberon M, Kalmbach L, Vermeer JE, Rojas-Murcia N, Santuari L, Hardtke CS, Geldner N. Polarly localized kinase SGN1 is required for Casparian strip integrity and positioning. Nat Plants. 2016 2 :16113 [PubMed] [GK-allele myb36-2]   [716] Faden F, Ramezani T, Mielke S, Almudi I, Nairz K, Froehlich MS, Höckendorff J, Brandt W, Hoehenwarter W, Dohmen RJ, Schnittger A, Dissmeyer N. Phenotypes on demand via switchable target protein degradation in multicellular organisms. Nat Commun. 2016 7 :12202 [PubMed] [GK-allele ttg1-21]   [715] Kim J, Kang H, Park J, Kim W, Yoo J, Lee N, Kim J, Yoon TY, Choi G. PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1. Plant Cell. 2016 28 (6):1388-1405 [PubMed] [GK-allele boi-gb012]   [714] Cabassa-Hourton C, Schertl P, Bordenave-Jacquemin M, Saadallah K, Guivarc'h A, Lebreton S, Planchais S, Klodmann J, Eubel H, Crilat E, Lefebvre-De Vos D, Ghelis T, Richard L, Abdelly C, Carol P, Braun HP, Savouré A. Proteomic and functional analysis of proline dehydrogenase 1 link proline catabolism to mitochondrial electron transport in Arabidopsis thaliana. Biochem J. 2016 473 (17):2623-2634 [PubMed] [GK-allele prodh1-3] [GK-allele prodh2-2]   [713] Chen M, Herde M, Witte CP. Of the Nine Cytidine Deaminase-Like Genes in Arabidopsis, Eight Are Pseudogenes and Only One Is Required to Maintain Pyrimidine Homeostasis in Vivo. Plant Physiol. 2016 171 (2):799-809 [PubMed] [GK-allele cda-1]   [712] Zhang J, Xie S, Cheng J, Lai J, Zhu JK, Gong Z. The Second Subunit of DNA Polymerase Delta Is Required for Genomic Stability and Epigenetic Regulation. Plant Physiol. 2016 171 (2):1192-1208 [PubMed] [GK-allele pold2-2]   [711] Lou YR1, Bor M1, Yan J1, Preuss AS1, Jander G2. Arabidopsis NATA1 Acetylates Putrescine and Decreases Defense-Related Hydrogen Peroxide Accumulation. Plant Physiol. 2016 171 (2):1443-1455 [PubMed] [GK-allele nata1-1]   [710] Zhang J, Xie S, Zhu JK, Gong Z. Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis. Plant J. 2016 87 (6):629-640 [PubMed] [GK-allele fen1-2]   [709] Somssich M, Bleckmann A, Simon R. Shared and distinct functions of the pseudokinase CORYNE (CRN) in shoot and root stem cell maintenance of Arabidopsis. J Exp Bot. 2016 67 (16):4901-4915 [PubMed] [GK-allele clv2-gk]   [708] Herdean A, Teardo E, Nilsson AK, Pfeil BE, Johansson ON, Ünnep R, Nagy G, Zsiros O, Dana S, Solymosi K, Garab G, Szabó I, Spetea C, Lundin B. A voltage-dependent chloride channel fine-tunes photosynthesis in plants. Nat Commun. 2016 7 :11654 [PubMed] [GK-allele vccn1-2]   [707] Zhang Y, Li X, Goodrich J, Wu C, Wei H, Yang S, Feng X. Reduced function of the RNA-binding protein FPA rescues a T-DNA insertion mutant in the Arabidopsis ZHOUPI gene by promoting transcriptional read-through. Plant Mol Biol. 2016 91 (4-5):549-61 [PubMed] [GK-allele zou-4]   [706] Schneider A, Steinberger I, Herdean A, Gandini C, Eisenhut M, Kurz S, Morper A, Hoecker N, Rühle T, Labs M, Flügge UI, Geimer S, Schmidt SB, Husted S, Weber AP, Spetea C, Leister D. The Evolutionarily Conserved Protein PHOTOSYNTHESIS AFFECTED MUTANT71 Is Required for Efficient Manganese Uptake at the Thylakoid Membrane in Arabidopsis. Plant Cell. 2016 28 (4):892-910 [PubMed] [GK-allele pam71-1] [GK-allele pam71-2]   [705] Behmüller R, Kavkova E, Düh S, Huber CG, Tenhaken R. The role of arabinokinase in arabinose toxicity in plants. Plant J. 2016 87 (4):376-390 [PubMed] [GK-allele ara2-1]   [704] Chai S, Ge FR, Feng QN, Li S, Zhang Y. PLURIPETALA mediates ROP2 localization and stability in parallel to SCN1 but synergistically with TIP1 in root hairs. Plant J. 2016 86 (5):413-425 [PubMed] [GK-allele plp-3]   [703] Mekonnen DW, Ludewig F. Phenotypic and chemotypic studies using Arabidopsis and yeast reveal that GHB converts to SSA and induce toxicity. Plant Mol Biol. 2016 91 (4-5):429-440 [PubMed] [GK-allele glyr1-2] [GK-allele glyr2-1]   [702] Vrielynck N, Chambon A, Vezon D, Pereira L, Chelysheva L, De Muyt A, Mézard C, Mayer C, Grelon M. A DNA topoisomerase VI-like complex initiates meiotic recombination. Science. 2016 351 (6276):939-943 [PubMed] [GK-allele mtopVIB-2] [GK-allele rad51-1] [GK-allele spo11-2-3]   [701] Gidda SK, Park S, Pyc M, Yurchenko O, Cai Y, Wu P, Andrews DW, Chapman KD, Dyer JM, Mullen RT. Lipid Droplet-Associated Proteins (LDAPs) Are Required for the Dynamic Regulation of Neutral Lipid Compartmentation in Plant Cells. Plant Physiol. 2016 170 (4):2052-2071 [PubMed] [GK-allele ldap1-1]   [700] Colinas M, Eisenhut M, Tohge T, Pesquera M, Fernie AR, Weber AP and Fitzpatrick TB. Balancing of B6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis. Plant Cell. 2016 28 (2):439-453 [PubMed] [GK-allele pdx3-4]   [699] Cui X, Guo Z, Song L, Wang Y, Cheng Y. NCP1/AtMOB1A Plays Key Roles in Auxin-Mediated Arabidopsis Development. PLoS Genet. 2016 12 (3):e1005923 [PubMed] [GK-allele ncp1-2]   [698] Turek I, Gehring C. The plant natriuretic peptide receptor is a guanylyl cyclase and enables cGMP-dependent signaling. Plant Mol Biol. 2016 91 (3):275-286 [PubMed] [GK-allele atpnp-r1]   [697] Sechet J, Frey A, Effroy-Cuzzi D, Berger A, Perreau F, Cueff G, Charif D, Rajjou L, Mouille G, North HM, Marion-Poll A. Xyloglucan Metabolism Differentially Impacts the Cell Wall Characteristics of the Endosperm and Embryo during Arabidopsis Seed Germination. Plant Physiol. 2016 170 (3):1367-1380 [PubMed] [GK-allele xyl1-2]   [696] Lee IH, Lee IC, Kim J, Kim JH, Chung EH, Kim HJ, Park SJ, Kim YM, Kang SK, Nam HG, Woo HR, Lim PO. NORE1/SAUL1 integrates temperature dependent defense programs involving SGT1b and PAD4 pathways and leaf senescence in Arabidopsis. Physiol Plant. 2016 158 (2):180–199 [PubMed] [GK-allele sgt1b-gk] [GK-allele sobir1-gk] [GK-allele rps2-gk]   [695] Siena LA, Ortiz JP, Calderini O, Paolocci F, Cáceres ME, Kaushal P, Grisan S, Pessino SC, Pupilli F. An apomixis-linked ORC3-like pseudogene is associated with silencing of its functional homolog in apomictic Paspalum simplex. J Exp Bot. 2016 67 (6):1965-1978 [PubMed] [GK-allele orc3-2]   [694] Liu X1, Zhang J2, Abuahmad A1, Franks RG3, Xie DY4, Xiang QY5. Analysis of two TFL1 homologs of dogwood species (Cornus L.) indicates functional conservation in control of transition to flowering. Planta. 2016 243 (5):1129-1141 [PubMed] [GK-allele tfl1-18]   [693] Carvalho SD, Chatterjee M, Coleman L, Clancy MA, Folta KM. Analysis of Block of cell proliferation 1 (BOP1) activity in strawberry and Arabidopsis. Plant Sci. 2016 245 (4):84–93 [PubMed] [GK-allele bop1-2]   [692] Wu W, Liu S, Ruwe H, Zhang D, Melonek J, Zhu Y, Hu X, Gusewski S, Yin P, Small ID, Howell KA, Huang J. SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana. Plant J. 2016 85 (5):607-621 [PubMed] [GK-allele sot1–2]   [691] Shockey J, Regmi A, Cotton K, Adhikari N, Browse J, Bates PD. Identification of Arabidopsis GPAT9 (At5g60620) as an Essential Gene Involved in Triacylglycerol Biosynthesis. Plant Physiol. 2016 170 (1):163-179 [PubMed] [GK-allele gpat9-2]   [690] Li Y, Scott R, Doughty J, Grant M, Qi B. Protein S-Acyltransferase 14: A Specific Role for Palmitoylation in Leaf Senescence in Arabidopsis. Plant Physiol. 2016 170 (1):415-428 [PubMed] [GK-allele atpat14-2]   [689] Jessen D, Roth C, Wiermer M, Fulda M. Two activities of long-chain acyl-coenzyme A synthetase are involved in lipid trafficking between the endoplasmic reticulum and the plastid in Arabidopsis. Plant Physiol. 2015 167 (2):351-366 [PubMed] [GK-allele lacs2-3] [GK-allele lacs5-1]   [688] Bourdais G, Burdiak P, Gauthier A, Nitsch L, Salojärvi J, Rayapuram C, Idänheimo N, Hunter K, Kimura S, Merilo E, Vaattovaara A, Oracz K, Kaufholdt D, Pallon A, Anggoro DT, Glów D, Lowe J, Zhou J, Mohammadi O, Puukko T, Albert A, Lang H, Ernst D, Kollist H, Brosché M, Durner J, Borst JW, Collinge DB, Karpiński S, Lyngkjær MF, Robatzek S, Wrzaczek M, Kangasjärvi J. Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress. PLoS Genet. 2015 11 (7):e1005373 [PubMed] [GK-allele crk31-3] [GK-allele crk44-1]   [687] Séguéla-Arnaud M, Crismani W, Larchevêque C, Mazel J, Froger N, Choinard S, Lemhemdi A, Macaisne N, Van Leene J, Gevaert K, De Jaeger G, Chelysheva L, Mercier R. Multiple mechanisms limit meiotic crossovers: TOP3α and two BLM homologs antagonize crossovers in parallel to FANCM. Proc Natl Acad Sci USA. 2015 112 :4713-4718 [PubMed] [GK-allele top3α-2] [GK-allele recq4a-4]   [686] Lotkowska ME, Tohge T, Fernie AR, Xue GP, Balazadeh S, Mueller-Roeber B. The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress. Plant Physiol. 2015 169 (3):1862-80 [PubMed] [GK-allele myb112-1]   [685] Kamiya T1, Borghi M1, Wang P1, Danku JM1, Kalmbach L2, Hosmani PS1, Naseer S2, Fujiwara T3, Geldner N2, Salt DE4. The MYB36 transcription factor orchestrates Casparian strip formation. Proc Natl Acad Sci USA. 2015 112 (33):10533-10538 [PubMed] [GK-allele myb36-2]   [684] Scholz SS, Reichelt M, Mekonnen DW, Ludewig F, Mithöfer A. Insect Herbivory-Elicited GABA Accumulation in Plants is a Wound-Induced, Direct, Systemic, and Jasmonate-Independent Defense Response. Front Plant Sci. 2015 6 :1128 [PubMed] [GK-allele gad2-1] [GK-allele pop2-5]   [683] Tarasenko VI, Garnik EY, Koulintchenko MV, Konstantinov YM. Phenotypic Traits of Arabidopsis Plants Deficient in RpoTmp RNA Polymerase. J Stress Phys Bioche. 2015 11 (4):43-50 [Website] [GK-allele rpotmp]   [682] Šimášková M, O'Brien JA, Khan M, Van Noorden G, Ötvös K, Vieten A, De Clercq I, Van Haperen JM, Cuesta C, Hoyerová K, Vanneste S, Marhavý P, Wabnik K, Van Breusegem F, Nowack M, Murphy A, Friml J, Weijers D, Beeckman T, Benková E. Cytokinin response factors regulate PIN-FORMED auxin transporters. Nat Commun. 2015 6 :8717 [PubMed] [GK-allele crf6-S2] [GK-allele crf6-11.2]   [681] Lutz U, Posé D, Pfeifer M, Gundlach H, Hagmann J, Wang C, Weigel D, Mayer KF, Schmid M, Schwechheimer C. Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M. PLoS Genet. 2015 11 (10):e1005588 [PubMed] [GK-allele flm-GABI]   [680] Bush MS, Crowe N, Zheng T, Doonan JH. The RNA helicase, eIF4A-1, is required for ovule development and cell size homeostasis in Arabidopsis. Plant J. 2015 84 (5):989-1004 [PubMed] [GK-allele eif4a1-1] [GK-allele eif4a2-1]   [679] Woodson JD, Joens MS, Sinson AB, Gilkerson J, Salome PA, Weigel D, Fitzpatrick JA and Chory J. Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts. Science. 2015 350 (6259):450-454 [PubMed] [GK-allele fc2-2] [GK-allele fc1-2] [GK-allele atg7-2]   [678] Gerber L, Ohman D, Kumar M, Ranocha P, Goffner D and Sundberg B. High-throughput microanalysis of large lignocellulosic sample sets by Pyrolysis-Gas Chromatography/Mass Spectrometry. Physiol Plant. 2015 2 (156): 127–138 [PubMed] [GK-allele irx6-2]   [677] Jiang W, Yin Q, Wu R, Zheng G, Liu J, Dixon RA and Pang Y. Role of a chalcone isomerase-like protein in flavonoid biosynthesis in Arabidopsis thaliana. J Exp Bot. 2015 66 (22):7165-7179 [PubMed] [GK-allele chil-2]   [676] Romani I, Manavski N, Morosetti A, Tadini L, Maier S, Kühn K, Ruwe H, Schmitz-Linneweber C, Wanner G, Leister D, Kleine T. A Member of the Arabidopsis Mitochondrial Transcription Termination Factor Family Is Required for Maturation of Chloroplast Transfer RNAIle(GAU). Plant Physiol. 2015 169 (1):627-646 [PubMed] [GK-allele mterf6-1] [GK-allele ptac2]   [675] Johnston EJ, Rylott EL, Beynon E, Lorenz A, Chechik V, Bruce NC. Monodehydroascorbate reductase mediates TNT toxicity in plants. Science. 2015 349 (6252):1072-1075 [PubMed] [GK-allele mdhar6-3]   [674] Mair A, Pedrotti L, Wurzinger B, Anrather D, Simeunovic A, Weiste C, Valerio C, Dietrich K, Kirchler T, Nägele T, Vicente Carbajosa J, Hanson J, Baena-González E, Chaban C, Weckwerth W, Dröge-Laser W, Teige M. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. eLIFE. 2015 (4):e05828 [PubMed] [GK-allele akin10-1]   [673] Kalinowska K, Nagel MK, Goodman K, Cuyas L, Anzenberger F, Alkofer A, Paz-Ares J, Braun P, Rubio V, Otegui MS, Isono E. Arabidopsis ALIX is required for the endosomal localization of the deubiquitinating enzyme AMSH3. Proc Natl Acad Sci USA. 2015 112 (40):E5543-E5551 [PubMed] [GK-allele alix-2]   [672] Kim YS, Lee M, Lee JH, Lee HJ, Park CM. The unified ICE-CBF pathway provides a transcriptional feedback control of freezing tolerance during cold acclimation in Arabidopsis. Plant Mol Biol. 2015 89 (1-2):187-201 [PubMed] [GK-allele ice2-2]   [671] Kriegel A, Andres Z, Medzihradszky A, Kruger F, Scholl S, Delang S, Patir-Nebioglu MG, Gute G, Yang H, Murphy AS, Peer WA, Pfeiffer A, Krebs M, Lohmann JU and Schumacher K. Job Sharing in the Endomembrane System: Vacuolar Acidification Requires the Combined Activity of V-ATPase and V-PPase. Plant Cell. 2015 27 (12):3383-3396 [PubMed] [GK-allele avp1-1]   [670] Gonzalez N, Pauwels L, Baekelandt A, De Milde L, Van Leene J, Besbrugge N, Heyndrickx KS, Perez AC, Durand AN, De Clercq R, Van De Slijke E, Vanden Bossche R, Eeckhout D, Gevaert K, Vandepoele K, De Jaeger G, Goossens A and Inze D. A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis. Plant Cell. 2015 27 (8):2273-2287 [PubMed] [GK-allele kix8]   [669] Bac-Molenaar JA, Fradin EF, Becker FF, Rienstra JA, van der Schoot J, Vreugdenhil D and Keurentjes JJ. Genome-Wide Association Mapping of Fertility Reduction upon Heat Stress Reveals Developmental Stage-Specific QTLs in Arabidopsis thaliana. Plant Cell. 2015 27 (7):1857-1874 [PubMed] [GK-line 745A07]   [668] Gao MJ, Li X, Huang J, Gropp GM, Gjetvaj B, Lindsay DL, Wei S, Coutu C, Chen Z, Wan XC, Hannoufa A, Lydiate DJ, Gruber MY, Chen ZJ and Hegedus DD. SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme. Nat Commun. 2015 6 :7243 [PubMed] [GK-allele scl15-2]   [667] Deng S, Xu J, Liu J, Kim SH, Shi S and Chua NH. JMJ24 binds to RDR2 and is required for the basal level transcription of silenced loci in Arabidopsis. Plant J. 2015 83 (5):770-782 [PubMed] [GK-allele jmj24-1]   [666] Minami A, Tominaga Y, Furuto A, Kondo M, Kawamura Y and Uemura M. Arabidopsis dynamin-related protein 1E in sphingolipid-enriched plasma membrane domains is associated with the development of freezing tolerance. Plant J. 2015 83 (3):501-514 [PubMed] [GK-allele drp1e-2]   [665] Mortimer JC, Faria-Blanc N, Yu X, Tryfona T, Sorieul M, Ng YZ, Zhang Z, Stott K, Anders N and Dupree P. An unusual xylan in Arabidopsis primary cell walls is synthesised by GUX3, IRX9L, IRX10L and IRX14. Plant J. 2015 83 (3):413-426 [PubMed] [GK-allele gux3-2] [GK-allele gux2-1]   [664] Mai HJ, Lindermayr C, von Toerne C, Fink-Straube C, Durner J and Bauer P. Iron and FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-dependent regulation of proteins and genes in Arabidopsis thaliana roots. Proteomics. 2015 15 (17):3030-3047 [PubMed] [GK-allele fit-3]   [663] Song J, Keppler BD, Wise RR and Bent AF. PARP2 Is the Predominant Poly(ADP-Ribose) Polymerase in Arabidopsis DNA Damage and Immune Responses. PLoS Genet. 2015 11 (5):e1005200 [PubMed] [GK-allele parp1-1] [GK-allele parp1-2] [GK-allele parp2-1]   [662] Thireault C, Shyu C, Yoshida Y, St Aubin B, Campos ML and Howe GA. Repression of jasmonate signaling by a non-TIFY JAZ protein in Arabidopsis. Plant J. 2015 82 (4):669-679 [PubMed] [GK-allele jaz13-1]   [661] Toyokura K, Yamaguchi K, Shigenobu S, Fukaki H, Tatematsu K and Okada K. Mutations in Plastidial 5-Aminolevulinic Acid Biosynthesis Genes Suppress a Pleiotropic Defect in Shoot Development of a Mitochondrial GABA Shunt Mutant in Arabidopsis. Plant Cell Physiol. 2015 56 (6):1229-1238 [PubMed] [GK-allele gsa2-2] [GK-allele ssadh-6]   [660] Garcia-Ruiz H, Carbonell A, Hoyer JS, Fahlgren N, Gilbert KB, Takeda A, Giampetruzzi A, Garcia Ruiz MT, McGinn MG, Lowery N, Martinez Baladejo MT and Carrington JC. Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection. PLoS Pathog. 2015 11 (3):e1004755 [PubMed] [GK-allele ago10–5]   [659] Mergner J, Heinzlmeir S, Kuster B and Schwechheimer C. DENEDDYLASE1 deconjugates NEDD8 from non-cullin protein substrates in Arabidopsis thaliana. Plant Cell. 2015 27 (3):741-753 [PubMed] [GK-allele den1-1]   [658] Herrmann NJ, Knoll A and Puchta H. The nuclease FAN1 is involved in DNA crosslink repair in Arabidopsis thaliana independently of the nuclease MUS81. Nucleic Acids Res. 2015 43 (7):3653-3666 [PubMed] [GK-allele fan1-1] [GK-allele mus81-1] [GK-allele recq4A-4]   [657] Ogawa E, Yamada Y, Sezaki N, Kosaka S, Kondo H, Kamata N, Abe M, Komeda Y and Takahashi T. ATML1 and PDF2 Play a Redundant and Essential Role in Arabidopsis Embryo Development. Plant Cell Physiol. 2015 56 (6):1183-1192 [PubMed]   [656] Molesini B, Mennella G, Martini F, Francese G and Pandolfini T. Involvement of the Putative N-Acetylornithine Deacetylase from Arabidopsis thaliana in Flowering and Fruit Development. Plant Cell Physiol. 2015 56 (6):1084-1096 [PubMed] [GK-allele naod-1]   [655] Tsutsui T, Nakano A and Ueda T. The Plant-Specific RAB5 GTPase ARA6 is Required for Starch and Sugar Homeostasis in Arabidopsis thaliana. Plant Cell Physiol. 2015 56 (6):1073-1083 [PubMed]   [654] Knuesting J, Riondet C, Maria C, Kruse I, Becuwe N, Konig N, Berndt C, Tourrette S, Guilleminot-Montoya J, Herrero E, Gaymard F, Balk J, Belli G, Scheibe R, Reichheld JP, Rouhier N and Rey P. Arabidopsis glutaredoxin S17 and its partner, the nuclear factor Y subunit C11/negative cofactor 2α, contribute to maintenance of the shoot apical meristem under long-day photoperiod. Plant Physiol. 2015 167 (4):1643-1658 [PubMed] [GK-allele nfyc11-1]   [653] Kotur Z and Glass AD. A 150 kDa plasma membrane complex of AtNRT2.5 and AtNAR2.1 is the major contributor to constitutive high-affinity nitrate influx in Arabidopsis thaliana. Plant Cell Environ. 2015 38 (8):1490-1502 [PubMed]   [652] Liu F, Gong D, Zhang Q, Wang D, Cui M, Zhang Z, Liu G, Wu J and Wang Y. High-throughput generation of an activation-tagged mutant library for functional genomic analyses in tobacco. Planta. 2015 241 (3):629-640 [PubMed]   [651] Kuhn K, Yin G, Duncan O, Law SR, Kubiszewski-Jakubiak S, Kaur P, Meyer E, Wang Y, Small CC, Giraud E, Narsai R and Whelan J. Decreasing electron flux through the cytochrome and/or alternative respiratory pathways triggers common and distinct cellular responses dependent on growth conditions. Plant Physiol. 2015 167 (1):228-250 [PubMed]   [650] Stucky DF, Arpin JC and Schrick K. Functional diversification of two UGT80 enzymes required for steryl glucoside synthesis in Arabidopsis. J Exp Bot. 2015 66 (1):189-201 [PubMed]   [649] Humphrey TV, Haasen KE, Aldea-Brydges MG, Sun H, Zayed Y, Indriolo E and Goring DR. PERK-KIPK-KCBP signalling negatively regulates root growth in Arabidopsis thaliana. J Exp Bot. 2015 66 (1):71-83 [PubMed]   [648] Kobayashi K, Suzuki T, Iwata E, Nakamichi N, Suzuki T, Chen P, Ohtani M, Ishida T, Hosoya H, Mueller S, Leviczky T, Pettko-Szandtner A, Darula Z, Iwamoto A, Nomoto M, Tada Y, Higashiyama T, Demura T, Doonan JH, Hauser MT, Sugimoto K, Umeda M, Magyar Z, Boegre L, Ito M. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J. 2015 34 (15):1992-2007 [PubMed] [GK-allele myb3r3-2]   [647] Kim JI, Dolan WL, Anderson NA and Chapple C. Indole Glucosinolate Biosynthesis Limits Phenylpropanoid Accumulation in Arabidopsis thaliana. Plant Cell. 2015 27 (5):1529-1546 [PubMed] [GK-allele pal2-3]   [646] Cole RA, McInally SA and Fowler JE. Developmentally distinct activities of the exocyst enable rapid cell elongation and determine meristem size during primary root growth in Arabidopsis. BMC Plant Biol. 2014 14 :386 [PubMed]   [645] Bock S, Ortelt J and Link G. AtSIG6 and other members of the sigma gene family jointly but differentially determine plastid target gene expression in Arabidopsis thaliana. Front Plant Sci. 2014 5 :667 [PubMed]   [644] Armbruster U, Carrillo LR, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry JA, Kramer DM and Jonikas MC. Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nat Commun. 2014 5 :5439 [PubMed]   [643] Tomanov K, Zeschmann A, Hermkes R, Eifler K, Ziba I, Grieco M, Novatchkova M, Hofmann K, Hesse H and Bachmair A. Arabidopsis PIAL1 and 2 promote SUMO chain formation as E4-type SUMO ligases and are involved in stress responses and sulfur metabolism. Plant Cell. 2014 26 (11):4547-4560 [PubMed]   [642] Holtgrawe D, Sorensen TR, Viehover P, Schneider J, Schulz B, Borchardt D, Kraft T, Himmelbauer H and Weisshaar B. Reliable in silico identification of sequence polymorphisms and their application for extending the genetic map of sugar beet (Beta vulgaris). PLoS ONE. 2014 9 (10):e110113 [PubMed]   [641] Chong J, Piron MC, Meyer S, Merdinoglu D, Bertsch C and Mestre P. The SWEET family of sugar transporters in grapevine: VvSWEET4 is involved in the interaction with Botrytis cinerea. J Exp Bot. 2014 65 (22):6589-6601 [PubMed]   [640] Kalhorzadeh P, Hu Z, Cools T, Amiard S, Willing EM, De Winne N, Gevaert K, De Jaeger G, Schneeberger K, White CI and De Veylder L. Arabidopsis thaliana RNase H2 deficiency counteracts the needs for the WEE1 checkpoint kinase but triggers genome instability. Plant Cell. 2014 26 (9):3680-3692 [PubMed]   [639] Pallakies H and Simon R. The CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis. Mol Plant. 2014 7 (11):1619-1636 [PubMed]   [638] Bao Y, Song WM, Jin YL, Jiang CM, Yang Y, Li B, Huang WJ, Liu H and Zhang HX. Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress. Plant Mol Biol. 2014 86 (4-5):471-483 [PubMed]   [637] Grob S, Schmid MW and Grossniklaus U. Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. Mol Cell. 2014 55 (5):678-693 [PubMed]   [636] Majovsky P, Naumann C, Lee CW, Lassowskat I, Trujillo M, Dissmeyer N and Hoehenwarter W. Targeted proteomics analysis of protein degradation in plant signaling on an LTQ-Orbitrap mass spectrometer. J Proteome Res. 2014 13 (10):4246-4258 [PubMed]   [635] Sanchez-Bermejo E, Castrillo G, del Llano B, Navarro C, Zarco-Fernandez S, Martinez-Herrera DJ, Leo-del Puerto Y, Munoz R, Camara C, Paz-Ares J, Alonso-Blanco C and Leyva A. Natural variation in arsenate tolerance identifies an arsenate reductase in Arabidopsis thaliana. Nat Commun. 2014 5 :4617 [PubMed]   [634] Jali SS, Rosloski SM, Janakirama P, Steffen JG, Zhurov V, Berleth T, Clark RM and Grbic V. A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development. Plant J. 2014 80 (2):242-254 [PubMed]   [633] Lezhneva L, Kiba T, Feria-Bourrellier AB, Lafouge F, Boutet-Mercey S, Zoufan P, Sakakibara H, Daniel-Vedele F and Krapp A. The Arabidopsis nitrate transporter NRT2.5 plays a role in nitrate acquisition and remobilization in nitrogen-starved plants. Plant J. 2014 80 (2):230-241 [PubMed]   [632] Hooks MA, Allwood JW, Harrison JK, Kopka J, Erban A, Goodacre R and Balk J. Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis. Biochem J. 2014 463 (2):309-317 [PubMed]   [631] Hauck OK, Scharnberg J, Escobar NM, Wanner G, Giavalisco P and Witte CP. Uric acid accumulation in an Arabidopsis urate oxidase mutant impairs seedling establishment by blocking peroxisome maintenance. Plant Cell. 2014 26 (7):3090-3100 [PubMed]   [630] Muller-Xing R, Clarenz O, Pokorny L, Goodrich J and Schubert D. Polycomb-Group Proteins and FLOWERING LOCUS T Maintain Commitment to Flowering in Arabidopsis thaliana. Plant Cell. 2014 26 (6):2457-2471 [PubMed]   [629] Gibbs DJ, Voss U, Harding SA, Fannon J, Moody LA, Yamada E, Swarup K, Nibau C, Bassel GW, Choudhary A, Lavenus J, Bradshaw SJ, Stekel DJ, Bennett MJ and Coates JC. AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis. New Phytol. 2014 203 (4):1194-1207 [PubMed]   [628] Ebine K, Inoue T, Ito J, Ito E, Uemura T, Goh T, Abe H, Sato K, Nakano A and Ueda T. Plant vacuolar trafficking occurs through distinctly regulated pathways. Curr Biol. 2014 24 (12):1375-1382 [PubMed]   [627] Zsogon A, Szakonyi D, Shi X and Byrne ME. Ribosomal Protein RPL27a Promotes Female Gametophyte Development in a Dose-Dependent Manner. Plant Physiol. 2014 165 (3):1133-1143 [PubMed]   [626] Grubb CD, Zipp BJ, Kopycki J, Schubert M, Quint M, Lim EK, Bowles DJ, Pedras MS and Abel S. Comparative analysis of Arabidopsis UGT74 glucosyltransferases reveals a special role of UGT74C1 in glucosinolate biosynthesis. Plant J. 2014 79 (1):92-105 [PubMed]   [625] Baron KN, Schroeder DF and Stasolla C. GEm-Related 5 (GER5), an ABA and stress-responsive GRAM domain protein regulating seed development and inflorescence architecture. Plant Sci. 2014 223 :153-166 [PubMed]   [624] Pahari S, Cormark RD, Blackshaw MT, Liu C, Erickson JL and Schultz EA. Arabidopsis UNHINGED encodes a VPS51 homolog and reveals a role for the GARP complex in leaf shape and vein patterning. Development. 2014 141 (9):1894-1905 [PubMed]   [623] Colinas M, Shaw HV, Loubery S, Kaufmann M, Moulin M and Fitzpatrick TB. A pathway for repair of NAD(P)H in plants. J Biol Chem. 2014 289 (21):14692-14706 [PubMed]   [622] Kim SH, Son GH, Bhattacharjee S, Kim HJ, Nam JC, Nguyen PD, Hong JC and Gassmann W. The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. Plant J. 2014 78 (6):978-989 [PubMed]   [621] Mewalal R, Mizrachi E, Mansfield SD and Myburg AA. Cell wall-related proteins of unknown function: missing links in plant cell wall development. Plant Cell Physiol. 2014 55 (6):1031-1043 [PubMed]   [620] Yoshikawa T, Ito M, Sumikura T, Nakayama A, Nishimura T, Kitano H, Yamaguchi I, Koshiba T, Hibara K, Nagato Y and Itoh J. The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes. Plant J. 2014 78 (6):927-936 [PubMed]   [619] Szymanski J, Brotman Y, Willmitzer L and Cuadros-Inostroza A. Linking gene expression and membrane lipid composition of Arabidopsis. Plant Cell. 2014 26 (3):915-928 [PubMed] [GK-allele dgd2-1]   [618] Uhlken C, Horvath B, Stadler R, Sauer N and Weingartner M. MAIN-LIKE1 is a crucial factor for correct cell division and differentiation in Arabidopsis thaliana. Plant J. 2014 78 (1):107-120 [PubMed]   [617] Saez-Aguayo S, Rondeau-Mouro C, Macquet A, Kronholm I, Ralet MC, Berger A, Salle C, Poulain D, Granier F, Botran L, Loudet O, de Meaux J, Marion-Poll A and North HM. Local evolution of seed flotation in Arabidopsis. PLoS Genet. 2014 10 (3):e1004221 [PubMed]   [616] Ortiz-Marchena MI, Albi T, Lucas-Reina E, Said FE, Romero-Campero FJ, Cano B, Ruiz MT, Romero JM and Valverde F. Photoperiodic control of carbon distribution during the floral transition in Arabidopsis. Plant Cell. 2014 26 (2):565-584 [PubMed]   [615] Dyson BC, Webster RE and Johnson GN. GPT2: a glucose 6-phosphate/phosphate translocator with a novel role in the regulation of sugar signalling during seedling development. Ann Bot. 2014 113 (4):643-652 [PubMed]   [614] Haruta M, Sabat G, Stecker K, Minkoff BB and Sussman MR. A peptide hormone and its receptor protein kinase regulate plant cell expansion. Science. 2014 343 (6169):408-411 [PubMed]   [613] Coego A, Brizuela E, Castillejo P, Ruiz S, Koncz C, del Pozo JC, Pineiro M, Jarillo JA, Paz-Ares J, Leon J, Paz-Ares J, Puga M, Rajulu C, Alonso C, Ausin I, Castresana C, Cascon T, Cubas P, Nicolas M, Leyva A, Olsson S, Castrillo G, del Llano B, del Puerto YL, Prat S, Rodriguez M, Rojo E, Delgadillo MO, Simon C, Ochoa J, Piqueras R, Solano R, Boter M, Diez-Diaz M, Fernandez GM, Gutierrez C, Desvoyes B, Pages M, Riera M, Legnaioli T, Alabadi D, Blazquez MA, Sotillo B, Locascio A, Minguet EG, Felipo A, Alvarez-Mahecha JC, Leon J, Coego A, Brizuela E, Madueno F, Ferrandiz C, Berbel A, Domenech MJ, Vera P, Codes C, Arocas L, Salinas J, Resa CP, Lopez CC, Pardo JM, Cubero B, Hormaeche JP, de Luca A, Romero LC, Gotor C, Garcia I, Romero JM, Valverde F, Barrera F, Luque N, Micol JL, Ponce MR, Jover-Gil S, Botella MA, Esteban A, Garcia A, Carbonero P, Onate L, Jarillo JA, del Olmo I, Castro R, Pineiro M, Narro L, Lopez L, del Pozo JC, Navarro S, Manzano C, Carbajosa JV, Gomez M, Gonzalez M, Fenoll C, Mena M, Rapp A, Ballesteros I, Penarrubia L, Andres N, Carrio A, Lorenzo O, Quintero LA, Curto M, Rigo G, Zsigmond L, Papdi C, Szekely G, Csepl? A, Szabados L, Abraham E, Koncz C and Koncz Z. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J. 2014 77 (6):944-953 [PubMed]   [612] Cuellar Perez A, Nagels Durand A, Vanden Bossche R, De Clercq R, Persiau G, Van Wees SC, Pieterse CM, Gevaert K, De Jaeger G, Goossens A and Pauwels L. The non-JAZ TIFY protein TIFY8 from Arabidopsis thaliana is a transcriptional repressor. PLoS ONE. 2014 9 (1):e84891 [PubMed]   [611] Huang Y, Li CY, Qi Y, Park S and Gibson SI. SIS8, a putative mitogen-activated protein kinase kinase kinase, regulates sugar-resistant seedling development in Arabidopsis. Plant J. 2014 77 (4):577-588 [PubMed]   [610] Barthole G, To A, Marchive C, Brunaud V, Soubigou-Taconnat L, Berger N, Dubreucq B, Lepiniec L and Baud S. MYB118 Represses Endosperm Maturation in Seeds of Arabidopsis. Plant Cell. 2014 26 :3519-3537 [PubMed] [GK-allele fus3-10]   [609] Vukasinovic N, Cvrckova F, Elias M, Cole R, Fowler JE, Zarsky V1, Synek L. Dissecting a Hidden Gene Duplication: The Arabidopsis thaliana SEC10 Locus. PLoS ONE. 2014 9 (4):e94077 [PubMed] [GK-allele sec10a-1] [GK-allele sec10a-2] [GK-allele sec10b-2]   [608] Steinebrunner I, Gey U, Andres M, Garcia L, Gonzalez DH. Divergent functions of the Arabidopsis mitochondrial SCO proteins: HCC1 is essential for COX activity while HCC2 is involved in the UV-B stress response. Front Plant Sci. 2014 5 :87 [PubMed] [GK-allele hcc1] [GK-allele hcc2-1] [GK-allele hcc2-2]   [607] Zhang S, Wu J, Yuan D, Zhang D, Huang Z, Xiao L, Yang C. Perturbation of auxin homeostasis caused by mitochondrial FtSH4 gene-mediated peroxidase accumulation regulates Arabidopsis architechture. Mol Plant. 2014 [Epub ahead of print]. [PubMed]   [606] Sun X, Yang S, Sun M, Wang S, Ding X, Zhu D, Ji W, Cai H, Zhao C, Wang X, Zhu Y. A novel Glycine soja cysteine proteinase inhibitor GsCPI14, interacting with the calcium/calmodulin-binding receptor-like kinase GsCBRLK, regulated plant tolerance to alkali stress. Plant Mol Biol. 2014 [Epub ahead of print]. [PubMed]   [605] Matus JT, Ferrier T, Riechmann JL. Identification of Arabidopsis knockout lines for genes of interest. Methods Mol Biol. 2014 [Epub ahead of print]. [PubMed]   [604] Mondy S, Lenglet A, Cosson V, Pelletier S, Pateyron S, Gilard F, Scholte M, Brocard L, Couzigou JM, Tcherkez G, Péan M, Ratet P. GOLLUM [FeFe]-hydrogenase-like proteins are essential for plant development in normoxic conditions and modulate energy metabolism. Plant Cell Environ. 2014 37 (1):54-69 [PubMed]   [603] Zemach A, Kim MY, Hsieh PH, Coleman-Derr D, Eshed-Williams L, Thao K, Harmer SL, Zilberman D. The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-containing Heterochromatin. Cell. 2013 153 (1):193-205 [PubMed] [GK-allele drd1-7] [GK-allele h1.2-1]   [602] Li Y, Jiang J, Du ML, Li L, Wang XL, Li XB. A cotton gene encoding MYB-like transcription factor is specifically expressed in pollen and is involved in regulation of late anther/pollen development. Plant Cell Physiol. 2013 54 (6):893-906 [PubMed] [GK-allele myb21-3]   [601] Powikrowska M, Khrouchtchova A, Martens HJ, Zygadlo-Nielsen A, Melonek J, Schulz A, Krupinska K, Rodermel S, Jensen PE. SVR4 (suppressor of variegation 4) and SVR4-like: two proteins with a role in proper organization of the chloroplast genetic machinery. Physiol Plant. 2013 [Epub ahead of print]. [PubMed]   [600] Bethke G, Grundman RE, Sreekanta S, Truman W, Katagiri F, Glazebrook J. Arabidopsis PECTIN METHYLESTERASES Contribute to Immunity Against Pseudomonas syringae. Plant Physiol. 2013 [Epub ahead of print]. [PubMed]   [599] Kim HJ, Chiang YH, Kieber JJ, Schaller GE. SCF(KMD) controls cytokinin signaling by regulating the degradation of type-B response regulators. Proc Natl Acad Sci USA. 2013 110 (24):10028-33 [PubMed]   [598] Rugnone ML, Faigón Soverna A, Sanchez SE, Schlaen RG, Hernando CE, Seymour DK, Mancini E, Chernomoretz A, Weigel D, Más P, Yanovsky MJ. LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator. Proc Natl Acad Sci USA. 2013 110 (29):12120-5 [PubMed]   [597] Ohtani M, Demura T, Sugiyama M. Arabidopsis root initiation defective1, a DEAH-box RNA helicase involved in pre-mRNA splicing, is essential for plant development. Plant Cell. 2013 25 (6):2056-69 [PubMed]   [596] Mendes A, Kelly AA, van Erp H, Shaw E, Powers SJ, Kurup S, Eastmond PJ. bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating fatty acid desaturase3. Plant Cell. 2013 25 (8):3104-16 [PubMed]   [595] El Kasmi F, Krause C, Hiller U, Stierhof YD, Mayer U, Conner L, Kong L, Reichardt I, Sanderfoot AA and Jurgens G. SNARE complexes of different composition jointly mediate membrane fusion in Arabidopsis cytokinesis. Mol Biol Cell. 2013 24 (10):1593-601 [PubMed]   [594] Garcia-Molina A, Andrés-Colás N, Perea-García A, Neumann U, Dodani SC, Huijser P, Peñarrubia L, Puig S. The Arabidopsis COPT6 transport protein functions in copper distribution under copper-deficient conditions. Plant Cell Physiol. 2013 54 (8):1378-90 [PubMed]   [593] Mortimer JC, Yu X, Albrecht S, Sicilia F, Huichalaf M, Ampuero D, Michaelson LV, Murphy AM, Matsunaga T, Kurz S, Stephens E, Baldwin TC, Ishii T, Napier JA, Weber AP, Handford MG, Dupree P. Abnormal glycosphingolipid mannosylation triggers salicylic acid-mediated responses in Arabidopsis. Plant Cell. 2013 25 (5):1881-94 [PubMed]   [592] Zhang M, Schmitz AJ, Kadirjan-Kalbach DK, Terbush AD, Osteryoung KW. Chloroplast division protein ARC3 regulates chloroplast FtsZ-ring assembly and positioning in arabidopsis through interaction with FtsZ2. Plant Cell. 2013 25 (5):1787-802 [PubMed]   [591] Perrella G, Lopez-Vernaza MA, Carr C, Sani E, Gosselé V, Verduyn C, Kellermeier F, Hannah MA, Amtmann A. Histone deacetylase complex1 expression level titrates plant growth and abscisic acid sensitivity in Arabidopsis. Plant Cell. 2013 25 (9):3491-505 [PubMed]   [590] Perea-Garcia A, Garcia-Molina A, Andres-Colas N, Vera-Sirera F, Perez-Amador MA, Puig S and Penarrubia L. Arabidopsis copper transport protein COPT2 participates in the cross talk between iron deficiency responses and low-phosphate signaling. Plant Physiol. 2013 162 :180-194 [PubMed]   [589] Umezawa T, Sugiyama N, Takahashi F, Anderson JC, Ishihama Y, Peck SC and Shinozaki K. Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana. Sci Signal. 2013 6 :rs8 [PubMed]   [588] Li J, Nie X, Tan JL, Berger F. Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis. Proc Natl Acad Sci USA. 2013 110 (38):15479-84 [PubMed]   [587] Ren B, Chen Q, Hong S, Zhao W, Feng J, Feng H, Zuo J. The Arabidopsis Eukaryotic Translation Initiation Factor eIF5A-2 Regulates Root Protoxylem Development by Modulating Cytokinin Signaling. Plant Cell. 2013 25 (10):3841-57 [PubMed]   [586] Tsai H, Missirian V, Ngo KJ, Tran RK, Chan SR, Sundaresan V and Comai L. Production of a high-efficiency TILLING population through polyploidization. Plant Physiol. 2013 161 :1604-1614 [PubMed]   [585] Fatihi A, Zbierzak AM, Dörmann P. Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds. Plant Physiol. 2013 163 (2):973-85 [PubMed]   [584] Remy E, Cabrito TR, Baster P, Batista RA, Teixeira MC, Friml J, Sa-Correia I and Duque P. A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis. Plant Cell. 2013 25 :901-926 [PubMed]   [583] Lee JY, Lee HS, Song JY, Jung YJ, Reinbothe S, Park YI, Lee SY, Pai HS. Cell Growth Defect Factor1/CHAPERONE-LIKE PROTEIN OF POR1 Plays a Role in Stabilization of Light-Dependent Protochlorophyllide Oxidoreductase in Nicotiana benthamiana and Arabidopsis. Plant Cell. 2013 25 (10):3944-60 [PubMed]   [582] Wahl V, Ponnu J, Schlereth A, Arrivault S, Langenecker T, Franke A, Feil R, Lunn JE, Stitt M, Schmid M. Regulation of flowering by trehalose-6-phosphate signaling in Arabidopsis thaliana. Science. 2013 339 (6120):704-707 [PubMed] [GK-allele ft-10]   [581] Myouga F, Akiyama K, Tomonaga Y, Kato A, Sato Y, Kobayashi M, Nagata N, Sakurai T, Shinozaki K. The Chloroplast Function Database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins. Plant Cell Physiol. 2013 54 (2):e2 [PubMed]   [580] Takagi J, Renna L, Takahashi H, Koumoto Y, Tamura K, Stefano G, Fukao Y, Kondo M, Nishimura M, Shimada T, Brandizzi F, Hara-Nishimura I. MAIGO5 Functions in Protein Export from Golgi-Associated Endoplasmic Reticulum Exit Sites in Arabidopsis. Plant Cell. 2013 25 (11):4658-75 [PubMed]   [579] Kimberlin AN, Majumder S, Han G, Chen M, Cahoon RE, Stone JM, Dunn TM, Cahoon EB. Arabidopsis 56-amino Acid serine palmitoyltransferase-interacting proteins stimulate sphingolipid synthesis, are essential, and affect mycotoxin sensitivity. Plant Cell. 2013 25 (11):4627-39 [PubMed]   [578] van Esse W, van Mourik S, Albrecht C, van Leeuwen J, de Vries S. A mathematical model for the coreceptors SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 and SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE3 in BRASSINOSTEROID INSENSITIVE1-mediated signaling. Plant Physiol. 2013 163 (3):1472-81 [PubMed]   [577] Widemann E, Miesch L, Lugan R, Holder E, Heinrich C, Aubert Y, Miesch M, Pinot F, Heitz T. The amidohydrolases IAR3 and ILL6 contribute to jasmonoyl-isoleucine hormone turnover and generate 12-hydroxyjasmonic acid upon wounding in Arabidopsis leaves. J Biol Chem. 2013 288 (44):31701-14 [PubMed]   [576] Yamamoto H, Shikanai T. In Planta Mutagenesis of Src Homology 3 Domain-like Fold of NdhS, a Ferredoxin-binding Subunit of the Chloroplast NADH Dehydrogenase-like Complex in Arabidopsis: A CONSERVED ARG-193 PLAYS A CRITICAL ROLE IN FERREDOXIN BINDING. J Biol Chem. 2013 288 (51):36328-37 [PubMed]   [575] Jia Q, den Dulk-Ras A, Shen H, Hooykaas PJ, de Pater S. Poly(ADP-ribose)polymerases are involved in microhomology mediated back-up non-homologous end joining in Arabidopsis thaliana. Plant Mol Biol. 2013 82 (4-5):339-51 [PubMed]   [574] Perez-Perez JM, Esteve-Bruna D, Gonzalez-Bayon R, Kangasjarvi S, Caldana C, Hannah MA, Willmitzer L, Ponce MR and Micol JL. Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family. Plant Physiol. 2013 162 :589-603 [PubMed]   [573] Aguilar-Martinez JA and Sinha N. Analysis of the role of Arabidopsis class I TCP genes AtTCP7, AtTCP8, AtTCP22, and AtTCP23 in leaf development. Front Plant Sci. 2013 4 :406 [PubMed]   [572] McMichael CM, Reynolds GD, Koch LM, Wang C, Jiang N, Nadeau J, Sack FD, Gelderman MB, Pan J, Bednarek SY. Mediation of Clathrin-Dependent Trafficking during Cytokinesis and Cell Expansion by Arabidopsis STOMATAL CYTOKINESIS DEFECTIVE Proteins. Plant Cell. 2013 25 (10):3910-25 [PubMed]   [571] Tapken D, Anschuetz U, Liu LH, Huelsken T, Seebohm G, Becker D, Hollmann M. A plant homolog of animal glutamate receptors is an ion channel gated by multiple hydrophobic amino acids. Sci Signal. 2013 6 (279):ra47 [PubMed]   [570] Eisenhut M, Planchais S, Cabassa C, Guivarc'h A, Justin AM, Taconnat L, Renou JP, Linka M, Gagneul D, Timm S, Bauwe H, Carol P, Weber AP. Arabidopsis A BOUT DE SOUFFLE is a putative mitochondrial transporter involved in photorespiratory metabolism and is required for meristem growth at ambient CO2 levels. Plant J. 2013 73 (5):836-849 [PubMed] [GK-allele bou-2]   [569] Qi Y, Li X, Zhang Y, Starker CG, Baltes NJ, Zhang F, Sander JD, Reyon D, Joung JK, Voytas DF. Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases. G3 (Bethesda). 2013 G3 (Bethesda):1707-15 [PubMed]   [568] Pinosa F, Buhot N, Kwaaitaal M, Fahlberg P, Thordal-Christensen H, Ellerstrom M and Andersson MX. Arabidopsis phospholipase D-delta is involved in basal defense and nonhost resistance to powdery mildew fungi. Plant Physiol. 2013 163 (2):896-906 [PubMed] [GK-allele plda2-1]   [567] Yoshihara T, Spalding EP, Iino M. AtLAZY1 is a signaling component required for gravitropism of the Arabidopsis thaliana inflorescence. Plant J. 2013 74 (2):267-79 [PubMed]   [566] Saez-Aguayo S, Ralet MC, Berger A, Botran L, Ropartz D, Marion-Poll A, North HM. PECTIN METHYLESTERASE INHIBITOR6 promotes Arabidopsis mucilage release by limiting methylesterification of homogalacturonan in seed coat epidermal cells. Plant Cell. 2013 25 (1):308-23 [PubMed]   [565] Kim W, Park TI, Yoo SJ, Jun AR, Ahn JH. Generation and analysis of a complete mutant set for the Arabidopsis FT/TFL1 family shows specific effects on thermo-sensitive flowering regulation. J Exp Bot. 2013 64 (6):1715-29 [PubMed] [GK-allele ft-10] [GK-allele bft-2] [GK-allele tfl1-20]   [564] Tunc-Ozdemir M, Rato C, Brown E, Rogers S, Mooneyham A, Frietsch S, Myers CT, Poulsen LR, Malhó R, Harper JF. Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility. PLoS ONE. 2013 8 (2):e55277 [PubMed] [GK-allele cngc8-1] [GK-allele cngc8-2]   [563] Meng X, Xu J, He Y, Yang KY, Mordorski B, Liu Y, Zhang S. Phosphorylation of an ERF transcription factor by Arabidopsis MPK3/MPK6 regulates plant defense gene induction and fungal resistance. Plant Cell. 2013 25 (3):1126-42 [PubMed]   [562] Etchells JP, Provost CM, Mishra L, Turner SR. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation. Development. 2013 140 (10):2224-34 [PubMed]   [561] Bussell JD, Keech O, Fenske R, Smith SM. Requirement for the plastidial oxidative pentose phosphate pathway for nitrate assimilation in Arabidopsis. Plant J. 2013 75 (4):578-91 [PubMed]   [560] Tamaki T, Betsuyaku S, Fujiwara M, Fukao Y, Fukuda H, Sawa S. SUPPRESSOR OF LLP1 1-mediated C-terminal processing is critical for CLE19 peptide activity. Plant J. 2013 76 (6):970-81 [PubMed]   [559] Allahverdiyeva Y, Suorsa M, Rossi F, Pavesi A, Kater MM, Antonacci A, Tadini L, Pribil M, Schneider A, Wanner G, Leister D, Aro EM, Barbato R, Pesaresi P. Arabidopsis plants lacking PsbQ and PsbR subunits of the oxygen-evolving complex show altered PSII super-complex organization and short-term adaptive mechanisms. Plant J. 2013 75 (4):671-84 [PubMed]   [558] Kasmati AR, Töpel M, Khan NZ, Patel R, Ling Q, Karim S, Aronsson H, Jarvis P. Evolutionary, molecular and genetic analyses of Tic22 homologues in Arabidopsis thaliana chloroplasts. PLoS ONE. 2013 8 (5):e63863 [PubMed]   [557] Nakamura M, Buzas DM, Kato A, Fujita M, Kurata N, Kinoshita T. The role of Arabidopsis thaliana NAR1, a cytosolic iron-sulfur cluster assembly component, in gametophytic gene expression and oxidative stress responses in vegetative tissue. New Phytol. 2013 199 (4):925-35 [PubMed]   [556] Savage LJ, Imre KM, Hall DA, Last RL. Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins. PLoS ONE. 2013 8 (9):e73291 [PubMed]   [555] Weis C, Hückelhoven R, Eichmann R. LIFEGUARD proteins support plant colonization by biotrophic powdery mildew fungi. J Exp Bot. 2013 64 (12):3855-67 [PubMed]   [554] Bollhöner B, Zhang B, Stael S, Denancé N, Overmyer K, Goffner D, Van Breusegem F, Tuominen H. Post mortem function of AtMC9 in xylem vessel elements. New Phytol. 2013 200 (2):498-510 [PubMed]   [553] Kulich I, Pečenková T, Sekereš J, Smetana O, Fendrych M, Foissner I, Höftberger M, Zárský V. Arabidopsis exocyst subcomplex containing subunit EXO70B1 is involved in autophagy-related transport to the vacuole. Traffic. 2013 14 (11):1155-65 [PubMed]   [552] Pesch M, Schultheiß I, Digiuni S, Uhrig JF, Hülskamp M. Mutual control of intracellular localisation of the patterning proteins AtMYC1, GL1 and TRY/CPC in Arabidopsis. Development. 2013 140 (16):3456-67 [PubMed]   [551] Hofstetter SS, Dudnik A, Widmer H, Dudler R. Arabidopsis YELLOW STRIPE-LIKE7 (YSL7) and YSL8 transporters mediate uptake of Pseudomonas virulence factor syringolin A into plant cells. Mol Plant Microbe Interact. 2013 26 (11):1302-11 [PubMed]   [550] Wayne LL, Wallis JG, Kumar R, Markham JE, Browse J. Cytochrome b5 reductase encoded by CBR1 is essential for a functional male gametophyte in Arabidopsis. Plant Cell. 2013 25 (8):3052-66 [PubMed]   [549] Wen B, Nieuwland J, Murray JA. The Arabidopsis CDK inhibitor ICK3/KRP5 is rate limiting for primary root growth and promotes growth through cell elongation and endoreduplication. J Exp Bot. 2013 64 (4):1135-44 [PubMed]   [548] Schmidt S, Dethloff F, Beine-Golovchuk O, Kopka J. The REIL1 and REIL2 Proteins of Arabidopsis thaliana Are Required for Leaf Growth in the Cold. Plant Physiol. 2013 163 (4):1623-39 [PubMed]   [547] Ewald R, Hoffmann C, Neuhaus E, Bauwe H. Two redundant octanoyltransferases and one obligatory lipoyl synthase provide protein-lipoylation autonomy to plastids of Arabidopsis. Plant Biol. 2013 Plant Biol (Stuttg):35–42 [PubMed]   [546] Miwa K, Wakuta S, Takada S, Ide K, Takano J, Naito S, Omori H, Matsunaga T, Fujiwara T. Roles of BOR2, a Boron Exporter, in Cross Linking of Rhamnogalacturonan II and Root Elongation under Boron Limitation in Arabidopsis. Plant Physiol. 2013 163 (4):1699-709 [PubMed]   [545] Pinosa F, Begheldo M, Pasternak T, Zermiani M, Paponov IA, Dovzhenko A, Barcaccia G, Ruperti B, Palme K. The Arabidopsis thaliana Mob1A gene is required for organ growth and correct tissue patterning of the root tip. Ann Bot. 2013 112 (9):1803-1814 [PubMed] [GK-allele mob1A-1]   [544] Wenig U, Meyer S, Stadler R, Fischer S, Werner D, Lauter A, Melzer M, Hoth S, Weingartner M, Sauer N. Identification of MAIN, a factor involved in genome stability in the meristems of Arabidopsis thaliana. Plant J. 2013 75 (3):469-83 [PubMed]   [543] Tiruneh BS, Kim BH, Gallie DR, Roy B, von Arnim AG. The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant. BMC Biol. 2013 11 (1):123 [PubMed] [GK-allele eIF3k-1]   [542] Wydro MM, Sharma P, Foster JM, Bych K, Meyer EH, Balk J. The Evolutionarily Conserved Iron-Sulfur Protein INDH1 Is Required for Complex I Assembly and Mitochondrial Translation in Arabidopsis. Plant Cell. 2013 25 (10):4014-27 [PubMed]   [541] Yin R, Han K, Heller W, Albert A, Dobrev PI, Zažímalová E and Schaffner AR. Kaempferol 3-O-rhamnoside-7-O-rhamnoside is an endogenous flavonol inhibitor of polar auxin transport in Arabidopsis shoots. New Phytol. 2013 201 (2):466-475 [PubMed] [GK-allele tt7-6]   [540] Dahncke K and Witte CP. Plant Purine Nucleoside Catabolism Employs a Guanosine Deaminase Required for the Generation of Xanthosine in Arabidopsis. Plant Cell. 2013 (epub ahead of print): [PubMed] [GK-allele gsda-1]   [539] Ogawa-Ohnishi M, Matsushita W and Matsubayashi Y. Identification of three hydroxyproline O-arabinosyltransferases in Arabidopsis thaliana. Nat Chem Biol. 2013 9 (11):726-730 [PubMed] [GK-allele hpat1-1]   [538] Gish LA, Gagne JM, Han L, Deyoung BJ and Clark SE. WUSCHEL-Responsive At5g65480 Interacts with CLAVATA Components In Vitro and in Transient Expression. PLoS ONE. 2013 8 :e66345 [PubMed] [GK-allele cci1-2] [GK-allele cci1-3]   [537] Silveira AB, Trontin C, Cortijo S, Barau J, Del Bem LE, Loudet O, Colot V and Vincentz M. Extensive natural epigenetic variation at a de novo originated gene. PLoS Genet. 2013 9 :e1003437 [PubMed] [GK-line 755C03] [GK-line 522C07]   [536] Chatfield SP, Capron R, Severino A, Penttila PA, Alfred S, Nahal H and Provart NJ. Incipient stem cell niche conversion in tissue culture: Using a systems approach to probe early events in WUSCHEL-dependent conversion of lateral root primordia into shoot meristems. Plant J. 2013 xx :xx [PubMed] [GK-allele wus870H12]   [535] Matschi S, Werner S, Schulze WX, Legen J, Hilger HH and Romeis T. Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development. Plant J. 2013 xx :xx [PubMed] [GK-allele cpk28-1] [GK-allele cpk28-2]   [534] Takemiya A, Yamauchi S, Yano T, Ariyoshi C and Shimazaki K. Identification of a regulatory subunit of protein phosphatase 1 which mediates blue light signaling for stomatal opening. Plant Cell Physiol. 2013 54 (1):24-35 [PubMed]   [533] Aksoy E, Jeong IS and Koiwa H. Loss of function of Arabidopsis C-terminal domain phosphatase-like1 activates iron deficiency responses at the transcriptional level. Plant Physiol. 2013 161 (1):330-345 [PubMed]   [532] Cui MH, Ok SH, Yoo KS, Jung KW, Yoo SD and Shin JS. An Arabidopsis Cell Growth Defect Factor-Related Protein, CRS, Promotes Plant Senescence by Increasing the Production of Hydrogen Peroxide. Plant Cell Physiol. 2013 54 (1):155-167 [PubMed]   [531] Rampey RA, Baldridge MT, Farrow DC, Bay SN and Bartel B. Compensatory mutations in predicted metal transporters modulate auxin conjugate responsiveness in Arabidopsis. G3 (Bethesda). 2013 3 (1):131-141 [PubMed]   [530] Zhou W, Karcher D and Bock R. Importance of adenosine-to-inosine editing adjacent to the anticodon in an Arabidopsis alanine tRNA under environmental stress. Nucleic Acids Res. 2013 [Epub ahead of print]. [PubMed]   [529] Schreiber KJ, Austin RS, Gong Y, Zhang J, Fung P, Wang PW, Guttman DS, Desveaux D. Forward chemical genetic screens in Arabidopsis identify genes that influence sensitivity to the phytotoxic compound sulfamethoxazole. BMC Plant Biol. 2012 12 : [PubMed]   [528] Romani I, Tadini L, Rossi F, Masiero S, Pribil M, Jahns P, Kater M, Leister D, Pesaresi P. Versatile roles of Arabidopsis plastid ribosomal proteins in plant growth and development. Plant J. 2012 72 (6):922-934 [PubMed]   [527] Gruber M, Wu L, Links M, Gjetvaj B, Durkin J, Lewis C, Sharpe A, Lydiate D, Hegedus D. Analysis of expressed sequence tags in Brassica napus cotyledons damaged by crucifer flea beetle feeding. Genome. 2012 55 (2):118-33 [PubMed]   [526] Kim JS, Kim J, Lee TH, Jun KM, Kim TH, Kim YH, Park HM, Jeon JS, An G, Yoon UH, Nahm BH, Kim YK. FSTVAL: a new web tool to validate bulk flanking sequence tags. Plant Methods. 2012 8 (1):19 [PubMed]   [525] Denance N, Ranocha P, Oria N, Barlet X, Riviere MP, Yadeta KA, Hoffmann L, Perreau F, Clement G, Maia-Grondard A, van den Berg GC, Savelli B, Fournier S, Aubert Y, Pelletier S, Thomma BP, Molina A, Jouanin L, Marco Y and Goffner D. Arabidopsis wat1 (walls are thin1)-mediated resistance to the bacterial vascular pathogen, Ralstonia solanacearum, is accompanied by cross-regulation of salicylic acid and tryptophan metabolism. Plant J. 2012 73 (2):225-239 [PubMed] [GK-allele wat1-3]   [524] Zabotina OA, Avci U, Cavalier D, Pattathil S, Chou YH, Eberhard S, Danhof L, Keegstra K and Hahn MG. Mutations in multiple XXT genes of Arabidopsis reveal the complexity of xyloglucan biosynthesis. Plant Physiol. 2012 159 :1367-1384 [PubMed]   [523] Li G, Zhang J, Li J, Yang Z, Huang H and Xu L. Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis. Plant J. 2012 72 (2):261-270 [PubMed]   [522] Kuhlmann M and Mette MF. Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana. Plant Mol Biol. 2012 79 (6):623-633 [PubMed]   [521] Hua D, Wang C, He J, Liao H, Duan Y, Zhu Z, Guo Y, Chen Z and Gong Z. A plasma membrane receptor kinase, GHR1, mediates abscisic acid- and hydrogen peroxide-regulated stomatal movement in Arabidopsis. Plant Cell. 2012 24 (6):2546-2561 [PubMed]   [520] Wang Y, Carrie C, Giraud E, Elhafez D, Narsai R, Duncan O, Whelan J and Murcha MW. Dual location of the mitochondrial preprotein transporters B14.7 and Tim23-2 in complex I and the TIM17:23 complex in Arabidopsis links mitochondrial activity and biogenesis. Plant Cell. 2012 24 (6):2675-2695 [PubMed]   [519] Naseer S, Lee Y, Lapierre C, Franke R, Nawrath C and Geldner N. Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin. Proc Natl Acad Sci USA. 2012 109 (25):10101-10106 [PubMed]   [518] Wan J, Tanaka K, Zhang XC, Son GH, Brechenmacher L, Nguyen TH and Stacey G. LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis. Plant Physiol. 2012 160 (1):396-406 [PubMed]   [517] Reitz MU, Bissue JK, Zocher K, Attard A, Huckelhoven R, Becker K, Imani J, Eichmann R and Schafer P. The subcellular localization of Tubby-like proteins and participation in stress signaling and root colonization by the mutualist Piriformospora indica. Plant Physiol. 2012 160 (1):349-364 [PubMed]   [516] Waters MT, Brewer PB, Bussell JD, Smith SM and Beveridge CA. The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones. Plant Physiol. 2012 159 (3):1073-1085 [PubMed]   [515] Nakajima S, Ito H, Tanaka R and Tanaka A. Chlorophyll b reductase plays an essential role in maturation and storability of Arabidopsis seeds. Plant Physiol. 2012 160 (1):261-273 [PubMed]   [514] Mourad GS, Tippmann-Crosby J, Hunt KA, Gicheru Y, Bade K, Mansfield TA and Schultes NP. Genetic and molecular characterization reveals a unique nucleobase cation symporter 1 in Arabidopsis. FEBS Lett. 2012 586 (9):1370-1378 [PubMed]   [513] Hernandez ML, Whitehead L, He Z, Gazda V, Gilday A, Kozhevnikova E, Vaistij FE, Larson TR and Graham IA. A cytosolic acyltransferase contributes to triacylglycerol synthesis in sucrose-rescued Arabidopsis seed oil catabolism mutants. Plant Physiol. 2012 160 (1):215-225 [PubMed]   [512] Li R, Liu P, Wan Y, Chen T, Wang Q, Mettbach U, Baluska F, Samaj J, Fang X, Lucas WJ and Lin J. A membrane microdomain-associated protein, Arabidopsis Flot1, is involved in a clathrin-independent endocytic pathway and is required for seedling development. Plant Cell. 2012 24 (5):2105-2122 [PubMed]   [511] Jensen GS and Haswell ES. Functional analysis of conserved motifs in the mechanosensitive channel homolog MscS-Like2 from Arabidopsis thaliana. PLoS ONE. 2012 7 (6):e40336 [PubMed]   [510] Sreenivasulu N, Harshavardhan VT, Govind G, Seiler C and Kohli A. Contrapuntal role of ABA: does it mediate stress tolerance or plant growth retardation under long-term drought stress?. Gene. 2012 506 (2):265-273 [PubMed]   [509] Domenichini S, Benhamed M, De Jaeger G, Van De Slijke E, Blanchet S, Bourge M, De Veylder L, Bergounioux C and Raynaud C. Evidence for a role of Arabidopsis CDT1 proteins in gametophyte development and maintenance of genome integrity. Plant Cell. 2012 24 (7):2779-2791 [PubMed]   [508] Moffat CS, Ingle RA, Wathugala DL, Saunders NJ, Knight H and Knight MR. ERF5 and ERF6 play redundant roles as positive regulators of JA/Et-mediated defense against Botrytis cinerea in Arabidopsis. PLoS ONE. 2012 7 (4):e35995 [PubMed]   [507] Peret B, Swarup K, Ferguson A, Seth M, Yang Y, Dhondt S, James N, Casimiro I, Perry P, Syed A, Yang H, Reemmer J, Venison E, Howells C, Perez-Amador MA, Yun J, Alonso J, Beemster GT, Laplaze L, Murphy A, Bennett MJ, Nielsen E and Swarup R. AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development. Plant Cell. 2012 24 (7):2874-2885 [PubMed]   [506] Seo DH, Ryu MY, Jammes F, Hwang JH, Turek M, Kang BG, Kwak JM and Kim WT. Roles of four Arabidopsis U-box E3 ubiquitin ligases in negative regulation of abscisic acid-mediated drought stress responses. Plant Physiol. 2012 160 (1):556-568 [PubMed]   [505] Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, Dekker J, Kim JK and Jacobsen SE. MORC family ATPases required for heterochromatin condensation and gene silencing. Science. 2012 336 (6087):1448-1451 [PubMed] [GK-allele atmorc6-3]   [504] Bourbousse C, Ahmed I, Roudier F, Zabulon G, Blondet E, Balzergue S, Colot V, Bowler C and Barneche F. Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis. PLoS Genet. 2012 8 (7):e1002825 [PubMed]   [503] Welchen E, Hildebrandt TM, Lewejohann D, Gonzalez DH and Braun HP. Lack of cytochrome c in Arabidopsis decreases stability of Complex IV and modifies redox metabolism without affecting Complexes I and III. Biochim Biophys Acta. 2012 1817 (7):990-1001 [PubMed]   [502] Dal Santo S, Stampfl H, Krasensky J, Kempa S, Gibon Y, Petutschnig E, Rozhon W, Heuck A, Clausen T and Jonak C. Stress-induced GSK3 regulates the redox stress response by phosphorylating glucose-6-phosphate dehydrogenase in Arabidopsis. Plant Cell. 2012 24 (8):3380-3392 [PubMed]   [501] Shinya T, Motoyama N, Ikeda A, Wada M, Kamiya K, Hayafune M, Kaku H and Shibuya N. Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants. Plant Cell Physiol. 2012 53 (10):1696-1706 [PubMed]   [500] Knoll A, Higgins JD, Seeliger K, Reha SJ, Dangel NJ, Bauknecht M, Schropfer S, Franklin FC and Puchta H. The Fanconi anemia ortholog FANCM ensures ordered homologous recombination in both somatic and meiotic cells in Arabidopsis. Plant Cell. 2012 24 (4):1448-1464 [PubMed]   [499] Yu F, Qian L, Nibau C, Duan Q, Kita D, Levasseur K, Li X, Lu C, Li H, Hou C, Li L, Buchanan BB, Chen L, Cheung AY, Li D and Luan S. FERONIA receptor kinase pathway suppresses abscisic acid signaling in Arabidopsis by activating ABI2 phosphatase. Proc Natl Acad Sci USA. 2012 109 (36):14693-14698 [PubMed]   [498] Hajheidari M, Farrona S, Huettel B, Koncz Z and Koncz C. CDKF;1 and CDKD protein kinases regulate phosphorylation of serine residues in the C-terminal domain of Arabidopsis RNA polymerase II. Plant Cell. 2012 24 (4):1626-1642 [PubMed]   [497] Frei dit Frey N, Mbengue M, Kwaaitaal M, Nitsch L, Altenbach D, Haweker H, Lozano-Duran R, Njo MF, Beeckman T, Huettel B, Borst JW, Panstruga R and Robatzek S. Plasma membrane calcium ATPases are important components of receptor-mediated signaling in plant immune responses and development. Plant Physiol. 2012 159 (2):798-809 [PubMed]   [496] He C, Chen X, Huang H and Xu L. Reprogramming of H3K27me3 is critical for acquisition of pluripotency from cultured Arabidopsis tissues. PLoS Genet. 2012 8 (8):e1002911 [PubMed]   [495] Handford M, Rodriguez-Furlan C, Marchant L, Segura M, Gomez D, Alvarez-Buylla E, Xiong GY, Pauly M and Orellana A. Arabidopsis thaliana AtUTr7 encodes a golgi-localized UDP-glucose/UDP-galactose transporter that affects lateral root emergence. Mol Plant. 2012 5 (6):1263-1280 [PubMed]   [494] Maekawa S, Sato T, Asada Y, Yasuda S, Yoshida M, Chiba Y and Yamaguchi J. The Arabidopsis ubiquitin ligases ATL31 and ATL6 control the defense response as well as the carbon/nitrogen response. Plant Mol Biol. 2012 79 (3):217-227 [PubMed]   [493] Kim M, Lee U, Small I, des Francs-Small CC and Vierling E. Mutations in an Arabidopsis mitochondrial transcription termination factor-related protein enhance thermotolerance in the absence of the major molecular chaperone HSP101. Plant Cell. 2012 24 (8):3349-3365 [PubMed]   [492] Jensen JK, Schultink A, Keegstra K, Wilkerson CG and Pauly M. RNA-Seq analysis of developing nasturtium seeds (Tropaeolum majus): identification and characterization of an additional galactosyltransferase involved in xyloglucan biosynthesis. Mol Plant. 2012 5 (5):984-992 [PubMed]   [491] Anstead JA, Froelich DR, Knoblauch M and Thompson GA. Arabidopsis P-protein filament formation requires both AtSEOR1 and AtSEOR2. Plant Cell Physiol. 2012 53 (6):1033-1042 [PubMed]   [490] Brotman Y, Landau U, Pnini S, Lisec J, Balazadeh S, Mueller-Roeber B, Zilberstein A, Willmitzer L, Chet I and Viterbo A. The LysM receptor-like kinase LysM RLK1 is required to activate defense and abiotic-stress responses induced by overexpression of fungal chitinases in Arabidopsis plants. Mol Plant. 2012 5 (5):1113-1124 [PubMed]   [489] Stirnberg P, Liu JP, Ward S, Kendall SL and Leyser O. Mutation of the cytosolic ribosomal protein-encoding RPS10B gene affects shoot meristematic function in Arabidopsis. BMC Plant Biol. 2012 12 :160 [PubMed]   [488] Zhang H, Bishop B, Ringenberg W, Muir WM and Ogas J. The CHD3 remodeler PICKLE associates with genes enriched for trimethylation of histone H3 lysine 27. Plant Physiol. 2012 159 (1):418-432 [PubMed]   [487] Joly-Lopez Z, Forczek E, Hoen DR, Juretic N and Bureau TE. A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana. PLoS Genet. 2012 8 (9):e1002931 [PubMed]   [486] Egert A, Peters S, Guyot C, Stieger B and Keller F. An Arabidopsis T-DNA insertion mutant for galactokinase (AtGALK, At3g06580) hyperaccumulates free galactose and is insensitive to exogenous galactose. Plant Cell Physiol. 2012 53 (5):921-929 [PubMed]   [485] Chapelle A, Morreel K, Vanholme R, Le-Bris P, Morin H, Lapierre C, Boerjan W, Jouanin L and Demont-Caulet N. Impact of the absence of stem-specific β-glucosidases on lignin and monolignols. Plant Physiol. 2012 160 (3):1204-1217 [PubMed]   [484] Schnell J, Labbe H, Kovinich N, Manabe Y and Miki B. Comparability of imazapyr-resistant Arabidopsis created by transgenesis and mutagenesis. Transgenic Res. 2012 21 (6):1255-1264 [PubMed] [GK-allele csr1-8]   [483] Najdekrova L and Siroky J. NBS1 plays a synergistic role with telomerase in the maintenance of telomeres in Arabidopsis thaliana. BMC Plant Biol. 2012 12 :167 [PubMed]   [482] Janski N, Masoud K, Batzenschlager M, Herzog E, Evrard JL, Houlne G, Bourge M, Chaboute ME and Schmit AC. The GCP3-interacting proteins GIP1 and GIP2 are required for γ-tubulin complex protein localization, spindle integrity, and chromosomal stability. Plant Cell. 2012 24 (3):1171-1187 [PubMed]   [481] Inigo S, Giraldez AN, Chory J and Cerdan PD. Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription. Plant Physiol. 2012 160 (3):1662-1673 [PubMed]   [480] Nakamura M, Yagi N, Kato T, Fujita S, Kawashima N, Ehrhardt DW and Hashimoto T. Arabidopsis GCP3-interacting protein 1/MOZART 1 is an integral component of the γ-tubulin-containing microtubule nucleating complex. Plant J. 2012 71 (2):216-225 [PubMed]   [479] Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K and Boerjan W. A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. Plant Cell. 2012 24 (9):3506-3529 [PubMed]   [478] Xi J, Qiu Y, Du L and Poovaiah BW. Plant-specific trihelix transcription factor AtGT2L interacts with calcium/calmodulin and responds to cold and salt stresses. Plant Sci. 2012 185-186 :274-280 [PubMed]   [477] Zacharaki V, Benhamed M, Poulios S, Latrasse D, Papoutsoglou P, Delarue M and Vlachonasios KE. The Arabidopsis ortholog of the YEATS domain containing protein YAF9a regulates flowering by controlling H4 acetylation levels at the FLC locus. Plant Sci. 2012 196 :44-52 [PubMed]   [476] Windram O, Madhou P, McHattie S, Hill C, Hickman R, Cooke E, Jenkins DJ, Penfold CA, Baxter L, Breeze E, Kiddle SJ, Rhodes J, Atwell S, Kliebenstein DJ, Kim YS, Stegle O, Borgwardt K, Zhang C, Tabrett A, Legaie R, Moore J, Finkenstadt B, Wild DL, Mead A, Rand D, Beynon J, Ott S, Buchanan-Wollaston V and Denby KJ. Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. Plant Cell. 2012 24 (9):3530-3557 [PubMed]   [475] Rojas CM, Senthil-Kumar M, Wang K, Ryu CM, Kaundal A and Mysore KS. Glycolate oxidase modulates reactive oxygen species-mediated signal transduction during nonhost resistance in Nicotiana benthamiana and Arabidopsis. Plant Cell. 2012 24 (1):336-352 [PubMed]   [474] Hamisch D, Randewig D, Schliesky S, Brautigam A, Weber AP, Geffers R, Herschbach C, Rennenberg H, Mendel RR and Hansch R. Impact of SO(2) on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing. New Phytol. 2012 196 (4):1074-1085 [PubMed]   [473] Link S, Engelmann K, Meierhoff K and Westhoff P. The atypical short-chain dehydrogenases HCF173 and HCF244 are jointly involved in translational initiation of the psbA mRNA of Arabidopsis. Plant Physiol. 2012 160 (4):2202-2218 [PubMed]   [472] Lee DK, Van Norman JM, Murphy C, Adhikari E, Reed JW and Sieburth LE. In the absence of BYPASS1-related gene function, the bps signal disrupts embryogenesis by an auxin-independent mechanism. Development. 2012 139 (4):805-815 [PubMed]   [471] Stenzel I, Otto M, Delker C, Kirmse N, Schmidt D, Miersch O, Hause B and Wasternack C. ALLENE OXIDE CYCLASE (AOC) gene family members of Arabidopsis thaliana: tissue- and organ-specific promoter activities and in vivo heteromerization. J Exp Bot. 2012 63 (17):6125-6138 [PubMed]   [470] Spadafora N, Perrotta L, Nieuwland J, Albani D, Bitonti MB, Herbert RJ, Doonan JH, Marchbank AM, Siciliano I, Lentz Gr?nlund A, Francis D and Rogers HJ. Gene dosage effect of WEE1 on growth and morphogenesis from arabidopsis hypocotyl explants. Ann Bot. 2012 110 (8):1631-1639 [PubMed]   [469] Izumi M, Tsunoda H, Suzuki Y, Makino A and Ishida H. RBCS1A and RBCS3B, two major members within the Arabidopsis RBCS multigene family, function to yield sufficient Rubisco content for leaf photosynthetic capacity. J Exp Bot. 2012 63 (5):2159-2170 [PubMed]   [468] van de Mortel JE, de Vos RC, Dekkers E, Pineda A, Guillod L, Bouwmeester K, van Loon JJ, Dicke M and Raaijmakers JM. Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101. Plant Physiol. 2012 160 (4):2173-2188 [PubMed]   [467] Kupsch C, Ruwe H, Gusewski S, Tillich M, Small I and Schmitz-Linneweber C. Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps. Plant Cell. 2012 24 (10):4266-4280 [PubMed]   [466] Jones MA, Williams BA, McNicol J, Simpson CG, Brown JW and Harmer SL. Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects. Plant Cell. 2012 24 (10):4066-4082 [PubMed]   [465] Frey A, Effroy D, Lefebvre V, Seo M, Perreau F, Berger A, Sechet J, To A, North HM and Marion-Poll A. Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members. Plant J. 2012 70 (3):501-512 [PubMed]   [464] Undurraga SF, Press MO, Legendre M, Bujdoso N, Bale J, Wang H, Davis SJ, Verstrepen KJ and Queitsch C. Background-dependent effects of polyglutamine variation in the Arabidopsis thaliana gene ELF3. Proc Natl Acad Sci USA. 2012 109 (47):19363-19367 [PubMed] [GK-allele elf3-200]   [463] Vainonen JP, Jaspers P, Wrzaczek M, Lamminmaki A, Reddy RA, Vaahtera L, Brosche M and Kangasjarvi J. RCD1-DREB2A interaction in leaf senescence and stress responses in Arabidopsis thaliana. Biochem J. 2012 442 (3):573-581 [PubMed]   [462] Vanderauwera S, Vandenbroucke K, Inze A, van de Cotte B, Muhlenbock P, De Rycke R, Naouar N, Van Gaever T, Van Montagu MC and Van Breusegem F. AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis. Proc Natl Acad Sci USA. 2012 109 (49):20113-20118 [PubMed]   [461] Rudolf M, Machettira AB, Gross LE, Weber KL, Bolte K, Bionda T, Sommer MS, Maier UG, Weber AP, Schleiff E and Tripp J. In Vivo Function of Tic22, a Protein Import Component of the Intermembrane Space of Chloroplasts. Mol Plant. 2012 [Epub ahead of print]. [PubMed]   [460] Liu J, Yang H, Lu Q, Wen X, Chen F, Peng L, Zhang L and Lu C. PSBP-DOMAIN PROTEIN1, a Nuclear-Encoded Thylakoid Lumenal Protein, Is Essential for Photosystem I Assembly in Arabidopsis. Plant Cell. 2012 24 (12):4992-5006 [PubMed]   [459] Perea-Resa C, Hernandez-Verdeja T, Lopez-Cobollo R, Castellano Mdel M and Salinas J. LSM Proteins Provide Accurate Splicing and Decay of Selected Transcripts to Ensure Normal Arabidopsis Development. Plant Cell. 2012 24 (12):4930-4947 [PubMed]   [458] Altmaier E, Emeny RT, Krumsiek J, Lacruz ME, Lukaschek K, Hafner S, Kastenmuller G, Romisch-Margl W, Prehn C, Mohney RP, Evans AM, Milburn MV, Illig T, Adamski J, Theis F, Suhre K and Ladwig KH. Metabolomic profiles in individuals with negative affectivity and social inhibition: A population-based study of Type D personality. Psychoneuroendocrinology. 2012 [Epub ahead of print]. [PubMed]   [457] Seeliger K, Dukowic-Schulze S, Wurz-Wildersinn R, Pacher M and Puchta H. BRCA2 is a mediator of RAD51- and DMC1-facilitated homologous recombination in Arabidopsis thaliana. New Phytol. 2012 193 (2):364-375 [PubMed]   [456] Liwanag AJ, Ebert B, Verhertbruggen Y, Rennie EA, Rautengarten C, Oikawa A, Andersen MC, Clausen MH and Scheller HV. Pectin Biosynthesis: GALS1 in Arabidopsis thaliana Is a β-1,4-Galactan β-1,4-Galactosyltransferase. Plant Cell. 2012 24 (12):5024-5036 [PubMed]   [455] Tiller N, Weingartner M, Thiele W, Maximova E, Schottler MA and Bock R. The plastid-specific ribosomal proteins of Arabidopsis thaliana can be divided into non-essential proteins and genuine ribosomal proteins. Plant J. 2012 69 :302-316 [PubMed]   [454] Riondet C, Desouris JP, Montoya JG, Chartier Y, Meyer Y and Reichheld JP. A dicotyledon-specific glutaredoxin GRXC1 family with dimer-dependent redox regulation is functionally redundant with GRXC2. Plant Cell Environ. 2012 35 (2):360-373 [PubMed]   [453] Lloyd J and Meinke D. A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis. Plant Physiol. 2012 158 (3):1115-1129 [PubMed]   [452] Yonekura-Sakakibara K, Fukushima A, Nakabayashi R, Hanada K, Matsuda F, Sugawara S, Inoue E, Kuromori T, Ito T, Shinozaki K, Wangwattana B, Yamazaki M and Saito K. Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana. Plant J. 2012 69 :154-167 [PubMed] [GK-allele ugt84a1-1]   [451] Son GH, Wan J, Kim HJ, Nguyen XC, Chung WS, Hong JC and Stacey G. Ethylene-responsive element-binding factor 5, ERF5, is involved in chitin-induced innate immunity response. Mol Plant Microbe Interact. 2012 25 (1):48-60 [PubMed]   [450] Dzianott A, Sztuba-Soli?ska J and Bujarski JJ. Mutations in the antiviral RNAi defense pathway modify Brome mosaic virus RNA recombinant profiles. Mol Plant Microbe Interact. 2012 25 (1):97-106 [PubMed]   [449] Chen GH, Liu CP, Chen SC and Wang LC. Role of ARABIDOPSIS A-FIFTEEN in regulating leaf senescence involves response to reactive oxygen species and is dependent on ETHYLENE INSENSITIVE2. J Exp Bot. 2012 63 :275-292 [PubMed]   [448] Waller JC, Ellens KW, Alvarez S, Loizeau K, Ravanel S and Hanson AD. Mitochondrial and plastidial COG0354 proteins have folate-dependent functions in iron-sulphur cluster metabolism. J Exp Bot. 2012 63 (1):403-411 [PubMed]   [447] Serrano M, Kanehara K, Torres M, Yamada K, Tintor N, Kombrink E, Schulze-Lefert P and Saijo Y. Repression of sucrose/ultraviolet B light-induced flavonoid accumulation in microbe-associated molecular pattern-triggered immunity in Arabidopsis. Plant Physiol. 2012 158 (1):408-422 [PubMed]   [446] Christ B, Schelbert S, Aubry S, Sussenbacher I, Muller T, Krautler B and Hortensteiner S. MES16, a Member of the Methylesterase Protein Family, Specifically Demethylates Fluorescent Chlorophyll Catabolites during Chlorophyll Breakdown in Arabidopsis. Plant Physiol. 2012 158 (2):628-641 [PubMed]   [445] Hur Y, Kim JH, Lee DJ, Chung KM and Woo HR. Overexpression of AtCHX24, a member of the cation/H+ exchangers, accelerates leaf senescence in Arabidopsis thaliana. Plant Sci. 2012 183 :175-182 [PubMed]   [444] Wallstrom SV, Aidemark M, Escobar MA and Rasmusson AG. An alternatively spliced domain of the NDC1 NAD(P)H dehydrogenase gene strongly influences the expression of the ACTIN2 reference gene in Arabidopsis thaliana. Plant Sci. 2012 183 :190-196 [PubMed]   [443] Singer SD, Hily JM and Cox KD. The sucrose synthase-1 promoter from Citrus sinensis directs expression of the β-glucuronidase reporter gene in phloem tissue and in response to wounding in transgenic plants. Planta. 2011 234 (3):623-637 [PubMed]   [442] Kuhn K, Carrie C, Giraud E, Wang Y, Meyer EH, Narsai R, des Francs-Small CC, Zhang B, Murcha MW and Whelan J. The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana. Plant J. 2011 67 (6):1067-1080 [PubMed]   [441] Grant K, Carey NM, Mendoza M, Schulze J, Pilon M, Pilon-Smits EA and van Hoewyk D. Adenosine 5'-phosphosulfate reductase (APR2) mutation in Arabidopsis implicates glutathione deficiency in selenate toxicity. Biochem J. 2011 438 (2):325-335 [PubMed]   [440] Zheng X, Miller ND, Lewis DR, Christians MJ, Lee KH, Muday GK, Spalding EP and Vierstra RD. AUXIN UP-REGULATED F-BOX PROTEIN1 regulates the cross talk between auxin transport and cytokinin signaling during plant root growth. Plant Physiol. 2011 156 :1878-1893 [PubMed]   [439] Danna CH, Millet YA, Koller T, Han SW, Bent AF, Ronald PC and Ausubel FM. The Arabidopsis flagellin receptor FLS2 mediates the perception of Xanthomonas Ax21 secreted peptides. Proc Natl Acad Sci USA. 2011 108 (22):9286-9291 [PubMed]   [438] Smith C, Barthet M, Melino V, Smith P, Day D and Soole K. Alterations in the mitochondrial alternative NAD(P)H Dehydrogenase NDB4 lead to changes in mitochondrial electron transport chain composition, plant growth and response to oxidative stress. Plant Cell Physiol. 2011 52 (7):1222-1237 [PubMed]   [437] Wang YY and Tsay YF. Arabidopsis nitrate transporter NRT1.9 is important in phloem nitrate transport. Plant Cell. 2011 23 (5):1945-1957 [PubMed]   [436] Ebine K, Fujimoto M, Okatani Y, Nishiyama T, Goh T, Ito E, Dainobu T, Nishitani A, Uemura T, Sato MH, Thordal-Christensen H, Tsutsumi N, Nakano A and Ueda T. A membrane trafficking pathway regulated by the plant-specific RAB GTPase ARA6. Nat Cell Biol. 2011 13 (7):853-859 [PubMed]   [435] Woodson JD, Perez-Ruiz JM and Chory J. Heme synthesis by plastid ferrochelatase I regulates nuclear gene expression in plants. Curr Biol. 2011 21 (10):897-903 [PubMed]   [434] Jadid N, Mialoundama AS, Heintz D, Ayoub D, Erhardt M, Mutterer J, Meyer D, Alioua A, Van Dorsselaer A, Rahier A, Camara B and Bouvier F. DOLICHOL PHOSPHATE MANNOSE SYNTHASE1 mediates the biogenesis of isoprenyl-linked glycans and influences development, stress response, and ammonium hypersensitivity in Arabidopsis. Plant Cell. 2011 23 (5):1985-2005 [PubMed]   [433] Phan HA, Iacuone S, Li SF and Parish RW. The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana. Plant Cell. 2011 23 (6):2209-2224 [PubMed]   [432] Schroder F, Lisso J and Mussig C. EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis. Plant Physiol. 2011 156 (3):1620-1630 [PubMed]   [431] Aki S, Nakai H, Aoyama T, Oka A and Tsuge T. AtSAP130/AtSF3b-3 function is required for reproduction in Arabidopsis thaliana. Plant Cell Physiol. 2011 52 (8):1330-1339 [PubMed]   [430] Brotman Y, Riewe D, Lisec J, Meyer RC, Willmitzer L and Altmann T. Identification of enzymatic and regulatory genes of plant metabolism through QTL analysis in Arabidopsis. J Plant Physiol. 2011 168 (12):1387-1394 [PubMed]   [429] ten Hove CA, de Jong M, Lapin D, Andel A, Sanchez-Perez GF, Tarutani Y, Suzuki Y, Heidstra R and van den Ackerveken G. Trans-repression of gene activity upstream of T-DNA tagged RLK902 links Arabidopsis root growth inhibition and downy mildew resistance. PLoS ONE. 2011 6 (4):e19028 [PubMed]   [428] Kevei Z, Baloban M, Da Ines O, Tiricz H, Kroll A, Regulski K, Mergaert P and Kondorosi E. Conserved CDC20 cell cycle functions are carried out by two of the five isoforms in Arabidopsis thaliana. PLoS ONE. 2011 6 (6):e20618 [PubMed]   [427] Kocourkova D, Krckova Z, Pejchar P, Veselkova S, Valentova O, Wimalasekera R, Scherer GF and Martinec J. The phosphatidylcholine-hydrolysing phospholipase C NPC4 plays a role in response of Arabidopsis roots to salt stress. J Exp Bot. 2011 62 (11):3753-3763 [PubMed]   [426] Toyokura K, Watanabe K, Oiwaka A, Kusano M, Tameshige T, Tatematsu K, Matsumoto N, Tsugeki R, Saito K and Okada K. Succinic semialdehyde dehydrogenase is involved in the robust patterning of Arabidopsis leaves along the adaxial-abaxial axis. Plant Cell Physiol. 2011 52 (8):1340-1353 [PubMed] [GK-allele ssadh-6]   [425] Takase T, Nishiyama Y, Tanihigashi H, Ogura Y, Miyazaki Y, Yamada Y and Kiyosue T. LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1. Plant J. 2011 67 (4):608-621 [PubMed]   [424] Conger R, Chen Y, Fornaciari S, Faso C, Held MA, Renna L and Brandizzi F. Evidence for the involvement of the Arabidopsis SEC24A in male transmission. J Exp Bot. 2011 62 (14):4917-4926 [PubMed]   [423] Yamamoto H, Peng L, Fukao Y and Shikanai T. An Src homology 3 domain-like fold protein forms a ferredoxin binding site for the chloroplast NADH dehydrogenase-like complex in Arabidopsis. Plant Cell. 2011 23 (4):1480-1493 [PubMed]   [422] Singer SD, Hily JM and Cox KD. Analysis of the enhancer-blocking function of the TBS element from Petunia hybrida in transgenic Arabidopsis thaliana and Nicotiana tabacum. Plant Cell Rep. 2011 30 (11):2013-2025 [PubMed]   [421] Furutani M, Sakamoto N, Yoshida S, Kajiwara T, Robert HS, Friml J and Tasaka M. Polar-localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers. Development. 2011 138 (10):2069-2078 [PubMed]   [420] Friedman EJ, Wang HX, Jiang K, Perovic I, Deshpande A, Pochapsky TC, Temple BR, Hicks SN, Harden TK and Jones AM. Acireductone dioxygenase 1 (ARD1) is an effector of the heterotrimeric G protein beta subunit in Arabidopsis. J Biol Chem. 2011 286 (34):30107-30118 [PubMed]   [419] Rautengarten C, Ebert B, Herter T, Petzold CJ, Ishii T, Mukhopadhyay A, Usadel B and Scheller HV. The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis. Plant Cell. 2011 23 (4):1373-1390 [PubMed]   [418] Geu-Flores F, Møldrup ME, Bottcher C, Olsen CE, Scheel D and Halkier BA. Cytosolic γ-glutamyl peptidases process glutathione conjugates in the biosynthesis of glucosinolates and camalexin in arabidopsis. Plant Cell. 2011 23 (6):2456-2469 [PubMed]   [417] Sozzani R and Benfey PN. High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype. Genome Biol. 2011 12 (3):219 [PubMed]   [416] Ashtiyani RK, Moghaddam AM, Schubert V, Rutten T, Fuchs J, Demidov D, Blattner FR and Houben A. AtHaspin phosphorylates histone H3 at threonine 3 during mitosis and contributes to embryonic patterning in Arabidopsis. Plant J. 2011 68 (3):443-454 [PubMed]   [415] Koszegi D, Johnston AJ, Rutten T, Czihal A, Altschmied L, Kumlehn J, Wust SE, Kirioukhova O, Gheyselinck J, Grossniklaus U and Baumlein H. Members of the RKD transcription factor family induce an egg cell-like gene expression program. Plant J. 2011 67 (2):280-291 [PubMed]   [414] Kirioukhova O, Johnston AJ, Kleen D, Kagi C, Baskar R, Moore JM, Baumlein H, Gross-Hardt R and Grossniklaus U. Female gametophytic cell specification and seed development require the function of the putative Arabidopsis INCENP ortholog WYRD. Development. 2011 138 (16):3409-3420 [PubMed]   [413] Svennerstam H, Jamtgard S, Ahmad I, Huss-Danell K, Nasholm T and Ganeteg U. Transporters in Arabidopsis roots mediating uptake of amino acids at naturally occurring concentrations. New Phytol. 2011 191 (2):459-467 [PubMed]   [412] Vanneste S, Coppens F, Lee E, Donner TJ, Xie Z, Van Isterdael G, Dhondt S, De Winter F, De Rybel B, Vuylsteke M, De Veylder L, Friml J, Inze D, Grotewold E, Scarpella E, Sack F, Beemster GT and Beeckman T. Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis. EMBO J. 2011 30 (16):3430-3441 [PubMed]   [411] Meyer S, Scholz-Starke J, De Angeli A, Kovermann P, Burla B, Gambale F and Martinoia E. Malate transport by the vacuolar AtALMT6 channel in guard cells is subject to multiple regulation. Plant J. 2011 67 (2):247-257 [PubMed]   [410] Stuttmann J, Hubberten HM, Rietz S, Kaur J, Muskett P, Guerois R, Bednarek P, Hoefgen R and Parker JE. Perturbation of Arabidopsis amino acid metabolism causes incompatibility with the adapted biotrophic pathogen Hyaloperonospora arabidopsidis. Plant Cell. 2011 23 (7):2788-2803 [PubMed]   [409] ten Hove CA, Bochdanovits Z, Jansweijer VM, Koning FG, Berke L, Sanchez-Perez GF, Scheres B and Heidstra R. Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set. Plant Mol Biol. 2011 76 (1-2):69-83 [PubMed]   [408] Widiez T, El Kafafi el S, Girin T, Berr A, Ruffel S, Krouk G, Vayssieres A, Shen WH, Coruzzi GM, Gojon A and Lepetit M. High nitrogen insensitive 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation. Proc Natl Acad Sci USA. 2011 108 (32):13329-13334 [PubMed]   [407] Kasmati AR, Topel M, Patel R, Murtaza G and Jarvis P. Molecular and genetic analyses of Tic20 homologues in Arabidopsis thaliana chloroplasts. Plant J. 2011 66 (5):877-889 [PubMed]   [406] Wilson ME, Jensen GS and Haswell ES. Two mechanosensitive channel homologs influence division ring placement in Arabidopsis chloroplasts. Plant Cell. 2011 23 (8):2939-2949 [PubMed]   [405] Katsiarimpa A, Anzenberger F, Schlager N, Neubert S, Hauser MT, Schwechheimer C and Isono E. The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization. Plant Cell. 2011 23 (8):3026-3040 [PubMed]   [404] Cavel E, Pillot M, Pontier D, Lahmy S, Bies-Etheve N, Vega D, Grimanelli D and Lagrange T. A plant-specific transcription factor IIB-related protein, pBRP2, is involved in endosperm growth control. PLoS ONE. 2011 6 (2):e17216 [PubMed]   [403] Jovtchev G, Borisova BE, Kuhlmann M, Fuchs J, Watanabe K, Schubert I and Mette MF. Pairing of lacO tandem repeats in Arabidopsis thaliana nuclei requires the presence of hypermethylated, large arrays at two chromosomal positions, but does not depend on H3-lysine-9-dimethylation. Chromosoma. 2011 120 (6):609-619 [PubMed]   [402] Schlaich NL. Arabidopsis thaliana- the model plant to study host-pathogen interactions. Curr Drug Targets. 2011 12 (7):955-966 [PubMed]   [401] Zhang S and Wang X. Overexpression of GASA5 increases the sensitivity of Arabidopsis to heat stress. J Plant Physiol. 2011 168 (17):2093-2101 [PubMed]   [400] Leoni C, Volpicella M, De Leo F, Gallerani R and Ceci LR. Genome walking in eukaryotes. FEBS J. 2011 278 (21):3953-3977 [PubMed]   [399] Fernandez-Calvo P, Chini A, Fernandez-Barbero G, Chico JM, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla JM, Pauwels L, Witters E, Puga MI, Paz-Ares J, Goossens A, Reymond P, De Jaeger G and Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. Plant Cell. 2011 23 (2):701-715 [PubMed]   [398] Cornelius S, Witz S, Rolletschek H and Mohlmann T. Pyrimidine degradation influences germination seedling growth and production of Arabidopsis seeds. J Exp Bot. 2011 62 (15):5623-5632 [PubMed]   [397] Blanvillain R, Young B, Cai YM, Hecht V, Varoquaux F, Delorme V, Lancelin JM, Delseny M and Gallois P. The Arabidopsis peptide kiss of death is an inducer of programmed cell death. EMBO J. 2011 30 (6):1173-1183 [PubMed]   [396] Dietzel L, Brautigam K, Steiner S, Schuffler K, Lepetit B, Grimm B, Schottler MA and Pfannschmidt T. Photosystem II supercomplex remodeling serves as an entry mechanism for state transitions in Arabidopsis. Plant Cell. 2011 23 (8):2964-2977 [PubMed]   [395] Bolle C, Schneider A and Leister D. Perspectives on Systematic Analyses of Gene Function in Arabidopsis thaliana: New Tools, Topics and Trends. Curr Genomics. 2011 12 (1):1-14 [PubMed]   [394] Niu Y, Figueroa P and Browse J. Characterization of JAZ-interacting bHLH transcription factors that regulate jasmonate responses in Arabidopsis. J Exp Bot. 2011 62 (6):2143-2154 [PubMed]   [393] Adio AM, Casteel CL, De Vos M, Kim JH, Joshi V, Li B, Juery C, Daron J, Kliebenstein DJ and Jander G. Biosynthesis and defensive function of Nδ-acetylornithine, a jasmonate-induced Arabidopsis metabolite. Plant Cell. 2011 23 (9):3303-3318 [PubMed]   [392] Balazadeh S, Kwasniewski M, Caldana C, Mehrnia M, Zanor MI, Xue GP and Mueller-Roeber B. ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana. Mol Plant. 2011 4 (2):346-360 [PubMed]   [391] Meguro M, Ito H, Takabayashi A, Tanaka R and Tanaka A. Identification of the 7-hydroxymethyl chlorophyll a reductase of the chlorophyll cycle in Arabidopsis. Plant Cell. 2011 23 (9):3442-3453 [PubMed]   [390] Engqvist MK, Kuhn A, Wienstroer J, Weber K, Jansen EE, Jakobs C, Weber AP and Maurino VG. Plant D-2-hydroxyglutarate dehydrogenase participates in the catabolism of lysine especially during senescence. J Biol Chem. 2011 286 (13):11382-11390 [PubMed]   [389] Yang Y and Karlson DT. Overexpression of AtCSP4 affects late stages of embryo development in Arabidopsis. J Exp Bot. 2011 62 (6):2079-2091 [PubMed]   [388] Bassil E, Ohto MA, Esumi T, Tajima H, Zhu Z, Cagnac O, Belmonte M, Peleg Z, Yamaguchi T and Blumwald E. The Arabidopsis intracellular Na+/H+ antiporters NHX5 and NHX6 are endosome associated and necessary for plant growth and development. Plant Cell. 2011 23 (1):224-239 [PubMed]   [387] Jin YM, Jung J, Jeon H, Won SY, Feng Y, Kang JS, Lee SY, Cheong JJ, Koiwa H and Kim M. AtCPL5, a novel Ser-2-specific RNA polymerase II C-terminal domain phosphatase, positively regulates ABA and drought responses in Arabidopsis. New Phytol. 2011 [Epub ahead of print]. [PubMed]   [386] Suttangkakul A, Li F, Chung T and Vierstra RD. The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis. Plant Cell. 2011 23 (10):3761-3779 [PubMed]   [385] Zeng W, Brutus A, Kremer JM, Withers JC, Gao X, Jones AD and He SY. A genetic screen reveals arabidopsis stomatal and/or apoplastic defenses against pseudomonas syringae pv. tomato DC3000. PLoS Pathog. 2011 7 (10):e1002291 [PubMed]   [384] Yoo KS, Ok SH, Jeong BC, Jung KW, Cui MH, Hyoung S, Lee MR, Song HK and Shin JS. Single cystathionine β-synthase domain-containing proteins modulate development by regulating the thioredoxin system in Arabidopsis. Plant Cell. 2011 23 (10):3577-3594 [PubMed]   [383] Fujii H, Verslues PE and Zhu JK. Arabidopsis decuple mutant reveals the importance of SnRK2 kinases in osmotic stress responses in vivo. Proc Natl Acad Sci USA. 2011 108 (4):1717-1722 [PubMed]   [382] Mano S, Nakamori C, Fukao Y, Araki M, Matsuda A, Kondo M and Nishimura M. A defect of peroxisomal membrane protein 38 causes enlargement of peroxisomes. Plant Cell Physiol. 2011 52 (12):2157-2172 [PubMed]   [381] Manabe Y, Nafisi M, Verhertbruggen Y, Orfila C, Gille S, Rautengarten C, Cherk C, Marcus SE, Somerville S, Pauly M, Knox JP, Sakuragi Y and Scheller HV. Loss-of-function mutation of REDUCED WALL ACETYLATION2 in Arabidopsis leads to reduced cell wall acetylation and increased resistance to Botrytis cinerea. Plant Physiol. 2011 155 (3):1068-1078 [PubMed]   [380] Lisso J, Schroder F, Fisahn J and Mussig C. NFX1-LIKE2 (NFXL2) suppresses abscisic acid accumulation and stomatal closure in Arabidopsis thaliana. PLoS ONE. 2011 6 (11):e26982 [PubMed]   [379] Olinares PD, Kim J and van Wijk KJ. The Clp protease system; a central component of the chloroplast protease network. Biochim Biophys Acta. 2011 1807 (8):999-1011 [PubMed]   [378] Gunl M, Neumetzler L, Kraemer F, de Souza A, Schultink A, Pena M, York WS and Pauly M. AXY8 encodes an alpha-fucosidase, underscoring the importance of apoplastic metabolism on the fine structure of Arabidopsis cell wall polysaccharides. Plant Cell. 2011 23 (11):4025-4040 [PubMed]   [377] Qi Y, Armbruster U, Schmitz-Linneweber C, Delannoy E, de Longevialle AF, Ruhle T, Small I, Jahns P and Leister D. Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. J Exp Bot. 2011 [Epub ahead of print]. [PubMed]   [376] Iglesias-Fernandez R, Rodriguez-Gacio MC, Barrero-Sicilia C, Carbonero P and Matilla A. Three endo-β-mannanase genes expressed in the micropylar endosperm and in the radicle influence germination of Arabidopsis thaliana seeds. Planta. 2011 233 (1):25-36 [PubMed] [GK-allele man7] [GK-allele man5]   [375] Azevedo H, Silva-Correia J, Oliveira J, Laranjeira S, Barbeta C, Amorim-Silva V, Botella MA, Lino-Neto T and Tavares RM. A strategy for the identification of new abiotic stress determinants in Arabidopsis using web-based data mining and reverse genetics. OMICS. 2011 15 (12):935-947 [PubMed]   [374] Spadafora ND, Doonan JH, Herbert RJ, Bitonti MB, Wallace E, Rogers HJ and Francis D. Arabidopsis T-DNA insertional lines for CDC25 are hypersensitive to hydroxyurea but not to zeocin or salt stress. Ann Bot. 2011 107 (7):1183-1192 [PubMed]   [373] Froelich DR, Mullendore DL, Jensen KH, Ross-Elliott TJ, Anstead JA, Thompson GA, Pelissier HC and Knoblauch M. Phloem ultrastructure and pressure flow: sieve-element-occlusion-related agglomerations do not affect translocation. Plant Cell. 2011 23 :4428-4445 [PubMed]   [372] Nagashima, Y, Mishiba, K, Suzuki, E, Shimada, Y, Iwata, Y, Koizumi, N. Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor. SCIENTIFIC REPORTS. 2011 1 :29 [PubMed]   [371] Roppolo D, De Rybel B, Tendon VD, Pfister A, Alassimone J, Vermeer JE, Yamazaki M, Stierhof YD, Beeckman T and Geldner N. A novel protein family mediates Casparian strip formation in the endodermis. Nature. 2011 473 :380-383 [PubMed] [GK-allele casp1-2] [GK-allele casp3-2]   [370] Bartrina I, Otto E, Strnad M, Werner T and Schmulling T. Cytokinin Regulates the Activity of Reproductive Meristems, Flower Organ Size, Ovule Formation, and Thus Seed Yield in Arabidopsis thaliana. Plant Cell. 2011 23 :69-80 [PubMed] [GK-allele ckx5-2]   [369] Kondo Y, Hirakawa Y, Kieber JJ and Fukuda H. CLE peptides can negatively regulate protoxylem vessel formation via cytokinin signaling. Plant Cell Physiol. 2011 52 (1):37-48 [PubMed]   [368] Block-Schmidt AS, Dukowic-Schulze S, Wanieck K, Reidt W and Puchta H. BRCC36A is epistatic to BRCA1 in DNA crosslink repair and homologous recombination in Arabidopsis thaliana. Nucleic Acids Res. 2011 39 (1):146-154 [PubMed]   [367] Steinebrunner I, Landschreiber M, Krause-Buchholz U, Teichmann J and Rodel G. HCC1, the Arabidopsis homologue of the yeast mitochondrial copper chaperone SCO1, is essential for embryonic development. J Exp Bot. 2011 62 (1):319-330 [PubMed] [GK-allele hcc1-2]   [366] Missihoun TD, Schmitz J, Klug R, Kirch HH and Bartels D. Betaine aldehyde dehydrogenase genes from Arabidopsis with different sub-cellular localization affect stress responses. Planta. 2011 233 (2):369-382 [PubMed]   [365] Ohkama-Ohtsu N, Sasaki-Sekimoto Y, Oikawa A, Jikumaru Y, Shinoda S, Inoue E, Kamide Y, Yokoyama T, Hirai MY, Shirasu K, Kamiya Y, Oliver DJ and Saito K. 12-oxo-phytodienoic acid-glutathione conjugate is transported into the vacuole in Arabidopsis. Plant Cell Physiol. 2011 52 (1):205-209 [PubMed]   [364] Guo J, Wang S, Valerius O, Hall H, Zeng Q, Li JF, Weston DJ, Ellis BE and Chen JG. Involvement of Arabidopsis RACK1 in protein translation and its regulation by abscisic acid. Plant Physiol. 2011 155 (1):370-383 [PubMed]   [363] Skylar A, Sung F, Hong F, Chory J and Wu X. Metabolic sugar signal promotes Arabidopsis meristematic proliferation via G2. Dev Biol. 2011 351 (1):82-89 [PubMed]   [362] Sakurai T, Kondou Y, Akiyama K, Kurotani A, Higuchi M, Ichikawa T, Kuroda H, Kusano M, Mori M, Saitou T, Sakakibara H, Sugano S, Suzuki M, Takahashi H, Takahashi S, Takatsuji H, Yokotani N, Yoshizumi T, Saito K, Shinozaki K, Oda K, Hirochika H and Matsui M. RiceFOX: A Database of Arabidopsis Mutant Lines Overexpressing Rice Full-Length cDNA that Contains a Wide Range of Trait Information to Facilitate Analysis of Gene Function. Plant Cell Physiol. 2011 52 (2):265-273 [PubMed]   [361] Molla-Morales A, Sarmiento-Manus R, Robles P, Quesada V, Perez-Perez JM, Gonzalez-Bayon R, Hannah MA, Willmitzer L, Ponce MR and Micol JL. Analysis of ven3 and ven6 reticulate mutants reveals the importance of arginine biosynthesis in Arabidopsis leaf development. Plant J. 2011 65 (3):335-345 [PubMed]   [360] Ueda M, Zhang Z and Laux T. Transcriptional Activation of Arabidopsis Axis Patterning Genes WOX8/9 Links Zygote Polarity to Embryo Development. Dev Cell. 2011 20 (2):264-270 [PubMed]   [359] Szakonyi D and Byrne ME. Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana. Plant J. 2011 65 (2):269-281 [PubMed] [GK-allele rpl27ac-3]   [358] Bryant N, Lloyd J, Sweeney C, Myouga F and Meinke D. Identification of Nuclear Genes Encoding Chloroplast-Localized Proteins Required for Embryo Development in Arabidopsis thaliana. Plant Physiol. 2011 155 (4):1678-1689 [PubMed]   [357] Koyama T, Mitsuda N, Seki M, Shinozaki K and Ohme-Takagi M. TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Plant Cell. 2010 22 :3574-3588 [PubMed] [GK-allele tcp4-1] [GK-allele tcp4-2] [GK-allele tcp13-2]   [356] Feng Y, Kang JS, Kim S, Yun DJ, Lee SY, Bahk JD and Koiwa H. Arabidopsis SCP1-like small phosphatases differentially dephosphorylate RNA polymerase II C-terminal domain. Biochem Biophys Res Commun. 2010 397 (2):355-360 [PubMed]   [355] Wimalasekera R, Pejchar P, Holk A, Martinec J and Scherer GF. Plant phosphatidylcholine-hydrolyzing phospholipases C NPC3 and NPC4 with roles in root development and brassinolide signaling in Arabidopsis thaliana. Mol Plant. 2010 3 (3):610-625 [PubMed]   [354] Sugliani M, Brambilla V, Clerkx EJ, Koornneef M and Soppe WJ. The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis. Plant Cell. 2010 22 (6):1936-1946 [PubMed]   [353] Latijnhouwers M, Xu XM and Møller SG. Arabidopsis stromal 70-kDa heat shock proteins are essential for chloroplast development. Planta. 2010 232 (3):567-578 [PubMed]   [352] Leiber RM, John F, Verhertbruggen Y, Diet A, Knox JP and Ringli C. The TOR pathway modulates the structure of cell walls in Arabidopsis. Plant Cell. 2010 22 (6):1898-1908 [PubMed]   [351] Huang CF, Yamaji N and Ma JF. Knockout of a bacterial-type ATP-binding cassette transporter gene, AtSTAR1, results in increased aluminum sensitivity in Arabidopsis. Plant Physiol. 2010 153 (4):1669-1677 [PubMed] [GK-allele atstar1-1]   [350] Cosson P, Sofer L, Le QH, Leger V, Schurdi-Levraud V, Whitham SA, Yamamoto ML, Gopalan S, Le Gall O, Candresse T, Carrington JC and Revers F. RTM3, which controls long-distance movement of potyviruses, is a member of a new plant gene family encoding a meprin and TRAF homology domain-containing protein. Plant Physiol. 2010 154 (1):222-232 [PubMed]   [349] Morris K, Thornber S, Codrai L, Richardson C, Craig A, Sadanandom A, Thomas B and Jackson S. DAY NEUTRAL FLOWERING represses CONSTANS to prevent Arabidopsis flowering early in short days. Plant Cell. 2010 22 (4):1118-1128 [PubMed]   [348] George GM, van der Merwe MJ, Nunes-Nesi A, Bauer R, Fernie AR, Kossmann J and Lloyd JR. Virus-induced gene silencing of plastidial soluble inorganic pyrophosphatase impairs essential leaf anabolic pathways and reduces drought stress tolerance in Nicotiana benthamiana. Plant Physiol. 2010 154 (1):55-66 [PubMed]   [347] Khan MS, Haas FH, Samami AA, Gholami AM, Bauer A, Fellenberg K, Reichelt M, Hansch R, Mendel RR, Meyer AJ, Wirtz M and Hell R. Sulfite reductase defines a newly discovered bottleneck for assimilatory sulfate reduction and is essential for growth and development in Arabidopsis thaliana. Plant Cell. 2010 22 (4):1216-1231 [PubMed]   [346] Stitt M, Lunn J and Usadel B. Arabidopsis and primary photosynthetic metabolism - more than the icing on the cake. Plant J. 2010 61 (6):1067-1091 [PubMed]   [345] Singer SD, Cox KD and Liu Z. Both the constitutive cauliflower mosaic virus 35S and tissue-specific AGAMOUS enhancers activate transcription autonomously in Arabidopsis thaliana. Plant Mol Biol. 2010 74 (3):293-305 [PubMed]   [344] Koornneef M and Meinke D. The development of Arabidopsis as a model plant. Plant J. 2010 61 (6):909-921 [PubMed]   [343] Da Ines O, Graf W, Franck KI, Albert A, Winkler JB, Scherb H, Stichler W and Schaffner AR. Kinetic analyses of plant water relocation using deuterium as tracer - reduced water flux of Arabidopsis pip2 aquaporin knockout mutants. Plant Biol. 2010 12 Suppl 1 :129-139 [PubMed]   [342] Yoo SJ, Chung KS, Jung SH, Yoo SY, Lee JS and Ahn JH. BROTHER OF FT AND TFL1 (BFT) has TFL1-like activity and functions redundantly with TFL1 in inflorescence meristem development in Arabidopsis. Plant J. 2010 63 (2):241-253 [PubMed] [GK-allele bft-2] [GK-allele tfl1-20]   [341] Thellmann M, Rybak K, Thiele K, Wanner G and Assaad FF. Tethering factors required for cytokinesis in Arabidopsis. Plant Physiol. 2010 154 (2):720-732 [PubMed]   [340] Funck D, Eckard S and Muller G. Non-redundant functions of two proline dehydrogenase isoforms in Arabidopsis. BMC Plant Biol. 2010 10 :70 [PubMed]   [339] Hirakawa Y, Kondo Y and Fukuda H. TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis. Plant Cell. 2010 22 (8):2618-2629 [PubMed]   [338] Thole V, Worland B, Wright J, Bevan MW and Vain P. Distribution and characterization of more than 1000 T-DNA tags in the genome of Brachypodium distachyon community standard line Bd21. Plant Biotechnol J. 2010 8 (6):734-747 [PubMed]   [337] Prabhakar V, Lottgert T, Geimer S, Dormann P, Kruger S, Vijayakumar V, Schreiber L, Gobel C, Feussner K, Feussner I, Marin K, Staehr P, Bell K, Flugge UI and Hausler RE. Phosphoenolpyruvate provision to plastids is essential for gametophyte and sporophyte development in Arabidopsis thaliana. Plant Cell. 2010 22 (8):2594-2617 [PubMed]   [336] Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD and Maizel A. miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell. 2010 22 (4):1104-1117 [PubMed]   [335] Sampedro J, Pardo B, Gianzo C, Guitian E, Revilla G and Zarra I. Lack of α-xylosidase activity in Arabidopsis alters xyloglucan composition and results in growth defects. Plant Physiol. 2010 154 (3):1105-1115 [PubMed]   [334] Hinz M, Wilson IW, Yang J, Buerstenbinder K, Llewellyn D, Dennis ES, Sauter M and Dolferus R. Arabidopsis RAP2.2: an ethylene response transcription factor that is important for hypoxia survival. Plant Physiol. 2010 153 (2):757-772 [PubMed]   [333] Hsia MM and Callis J. BRIZ1 and BRIZ2 proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth in Arabidopsis thaliana. J Biol Chem. 2010 285 (47):37070-37081 [PubMed]   [332] Hardy S, Legagneux V, Audic Y and Paillard L. Reverse genetics in eukaryotes. Biol Cell. 2010 102 (10):561-580 [PubMed]   [331] Millet YA, Danna CH, Clay NK, Songnuan W, Simon MD, Werck-Reichhart D and Ausubel FM. Innate immune responses activated in Arabidopsis roots by microbe-associated molecular patterns. Plant Cell. 2010 22 (3):973-990 [PubMed]   [330] Ikeyama Y, Tasaka M and Fukaki H. RLF, a cytochrome b(5)-like heme/steroid binding domain protein, controls lateral root formation independently of ARF7/19-mediated auxin signaling in Arabidopsis thaliana. Plant J. 2010 62 (5):865-875 [PubMed]   [329] Nakabayashi R, Yamazaki M and Saito K. A polyhedral approach for understanding flavonoid biosynthesis in Arabidopsis. Nat Biotechnol. 2010 27 (6):829-836 [PubMed]   [328] Chiu CC, Chen LJ and Li HM. Pea chloroplast DnaJ-J8 and Toc12 are encoded by the same gene and localized in the stroma. Plant Physiol. 2010 154 (3):1172-1182 [PubMed]   [327] Fendrych M, Synek L, Pecenkova T, Toupalova H, Cole R, Drdova E, Nebesarova J, Sedinova M, Hala M, Fowler JE and Zarsky V. The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation. Plant Cell. 2010 22 (9):3053-3065 [PubMed]   [326] Siaud N, Dubois E, Massot S, Richaud A, Dray E, Collier J and Doutriaux MP. The SOS screen in Arabidopsis: a search for functions involved in DNA metabolism. DNA Repair (Amst). 2010 9 (5):567-578 [PubMed]   [325] Tomaz T, Bagard M, Pracharoenwattana I, Linden P, Lee CP, Carroll AJ, Stroher E, Smith SM, Gardestrom P and Millar AH. Mitochondrial malate dehydrogenase lowers leaf respiration and alters photorespiration and plant growth in Arabidopsis. Plant Physiol. 2010 154 (3):1143-1157 [PubMed]   [324] Jun J, Fiume E, Roeder AH, Meng L, Sharma VK, Osmont KS, Baker C, Ha CM, Meyerowitz EM, Feldman LJ and Fletcher JC. Comprehensive analysis of CLE polypeptide signaling gene expression and overexpression activity in Arabidopsis. Plant Physiol. 2010 154 (4):1721-1736 [PubMed]   [323] Jaspers P, Overmyer K, Wrzaczek M, Vainonen JP, Blomster T, Salojarvi J, Reddy RA and Kangasjarvi J. The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants. BMC Genomics. 2010 11 :170 [PubMed]   [322] Luo H, Laluk K, Lai Z, Veronese P, Song F and Mengiste T. The Arabidopsis Botrytis Susceptible1 Interactor defines a subclass of RING E3 ligases that regulate pathogen and stress responses. Plant Physiol. 2010 154 (4):1766-1782 [PubMed]   [321] Pracharoenwattana I, Zhou W, Keech O, Francisco PB, Udomchalothorn T, Tschoep H, Stitt M, Gibon Y and Smith SM. Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen. Plant J. 2010 62 (5):785-795 [PubMed] [GK-allele fum2‐2]   [320] Mannuss A, Dukowic-Schulze S, Suer S, Hartung F, Pacher M and Puchta H. RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana. Plant Cell. 2010 22 (10):3318-3330 [PubMed]   [319] Yang W, Jiang D, Jiang J and He Y. A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis. Plant J. 2010 62 (4):663-673 [PubMed] [GK-allele pkdm7c]   [318] Kinoshita A, Betsuyaku S, Osakabe Y, Mizuno S, Nagawa S, Stahl Y, Simon R, Yamaguchi-Shinozaki K, Fukuda H and Sawa S. RPK2 is an essential receptor-like kinase that transmits the CLV3 signal in Arabidopsis. Development. 2010 137 (22):3911-3920 [PubMed]   [317] Kitamura S, Matsuda F, Tohge T, Yonekura-Sakakibara K, Yamazaki M, Saito K and Narumi I. Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants. Plant J. 2010 62 (4):549-559 [PubMed]   [316] Teschner J, Lachmann N, Schulze J, Geisler M, Selbach K, Santamaria-Araujo J, Balk J, Mendel RR and Bittner F. A novel role for Arabidopsis mitochondrial ABC transporter ATM3 in molybdenum cofactor biosynthesis. Plant Cell. 2010 22 (2):468-480 [PubMed]   [315] Lohmann D, Stacey N, Breuninger H, Jikumaru Y, Muller D, Sicard A, Leyser O, Yamaguchi S and Lenhard M. SLOW MOTION is required for within-plant auxin homeostasis and normal timing of lateral organ initiation at the shoot meristem in Arabidopsis. Plant Cell. 2010 22 (2):335-348 [PubMed]   [314] Pineda B, Gimenez-Caminero E, Garcia-Sogo B, Anton MT, Atares A, Capel J, Lozano R, Angosto T and Moreno V. Genetic and physiological characterization of the arlequin insertional mutant reveals a key regulator of reproductive development in tomato. Plant Cell Physiol. 2010 51 (3):435-447 [PubMed]   [313] Nelissen H, De Groeve S, Fleury D, Neyt P, Bruno L, Bitonti MB, Vandenbussche F, Van der Straeten D, Yamaguchi T, Tsukaya H, Witters E, De Jaeger G, Houben A and Van Lijsebettens M. Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation. Proc Natl Acad Sci USA. 2010 107 (4):1678-1683 [PubMed]   [312] Cordoba-Canero D, Dubois E, Ariza RR, Doutriaux MP and Roldan-Arjona T. Arabidopsis uracil DNA glycosylase (UNG) is required for base excision repair of uracil and increases plant sensitivity to 5-fluorouracil. J Biol Chem. 2010 285 (10):7475-7483 [PubMed]   [311] Lee S, Badieyan S, Bevan DR, Herde M, Gatz C and Tholl D. Herbivore-induced and floral homoterpene volatiles are biosynthesized by a single P450 enzyme (CYP82G1) in Arabidopsis. Proc Natl Acad Sci USA. 2010 107 (49):21205-21210 [PubMed]   [310] Myouga F, Akiyama K, Motohashi R, Kuromori T, Ito T, Iizumi H, Ryusui R, Sakurai T and Shinozaki K. The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis. Plant J. 2010 61 (3):529-542 [PubMed]   [309] Kim SS, Grienenberger E, Lallemand B, Colpitts CC, Kim SY, Souza Cde A, Geoffroy P, Heintz D, Krahn D, Kaiser M, Kombrink E, Heitz T, Suh DY, Legrand M and Douglas CJ. LAP6/POLYKETIDE SYNTHASE A and LAP5/POLYKETIDE SYNTHASE B encode hydroxyalkyl α-pyrone synthases required for pollen development and sporopollenin biosynthesis in Arabidopsis thaliana. Plant Cell. 2010 22 (12):4045-4066 [PubMed]   [308] Grienenberger E, Kim SS, Lallemand B, Geoffroy P, Heintz D, Souza Cde A, Heitz T, Douglas CJ and Legrand M. Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis. Plant Cell. 2010 22 (12):4067-4083 [PubMed]   [307] Andriotis VM, Kruger NJ, Pike MJ and Smith AM. Plastidial glycolysis in developing Arabidopsis embryos. New Phytol. 2010 185 (3):649-662 [PubMed]   [306] Bouvier-Navé P, Berna A, Noiriel A, Compagnon V, Carlsson AS, Banas A, Stymne S and Schaller H. Involvement of the phospholipid sterol acyltransferase1 in plant sterol homeostasis and leaf senescence. Plant Physiol. 2010 152 (1):107-119 [PubMed]   [305] Taniguchi YY, Taniguchi M, Tsuge T, Oka A and Aoyama T. Involvement of Arabidopsis thaliana phospholipase Dzeta2 in root hydrotropism through the suppression of root gravitropism. Planta. 2010 231 (2):491-497 [PubMed]   [304] Adams-Phillips L, Briggs AG and Bent AF. Disruption of poly(ADP-ribosyl)ation mechanisms alters responses of Arabidopsis to biotic stress. Plant Physiol. 2010 152 (1):267-280 [PubMed]   [303] Laugier E, Tarrago L, Dos Santos CV, Eymery F, Havaux M and Rey P. Arabidopsis thaliana plastidial methionine sulfoxide reductases B, MSRBs, account for most leaf peptide MSR activity and are essential for growth under environmental constraints through a role in the preservation of photosystem antennae. Plant J. 2010 61 (2):271-282 [PubMed]   [302] Zbierzak AM, Kanwischer M, Wille C, Vidi PA, Giavalisco P, Lohmann A, Briesen I, Porfirova S, Bréhélin C, Kessler F and Dörmann P. Intersection of the tocopherol and plastoquinol metabolic pathways at the plastoglobule. Biochem J. 2010 425 (2):389-399 [PubMed]   [301] Cheong MS, Park HC, Hong MJ, Lee J, Choi W, Jin JB, Bohnert HJ, Lee SY, Bressan RA and Yun DJ. Specific domain structures control abscisic acid-, salicylic acid-, and stress-mediated SIZ1 phenotypes. Plant Physiol. 2009 151 (4):1930-1942 [PubMed]   [300] Fristedt R, Carlberg I, Zygadlo A, Piippo M, Nurmi M, Aro EM, Scheller HV and Vener AV. Intrinsically unstructured phosphoprotein TSP9 regulates light harvesting in Arabidopsis thaliana. Biochemistry. 2009 48 :499-509 [PubMed] [GK-allele tsp9-1]   [299] Robert HS, Quint A, Brand D, Vivian-Smith A and Offringa R. BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development. Plant J. 2009 58 :109-121 [PubMed] [GK-allele bt5-1]   [298] Martin B, Ramiro M, Martinez-Zapater JM and Alonso-Blanco C. A high-density collection of EMS-induced mutations for TILLING in Landsberg erecta genetic background of Arabidopsis. BMC Plant Biol. 2009 9 :147 [PubMed]   [297] Huang L, Chen XY, Rim Y, Han X, Cho WK, Kim SW and Kim JY. Arabidopsis glucan synthase-like 10 functions in male gametogenesis. J Plant Physiol. 2009 166 (4):344-352 [PubMed] [GK-allele gsl10-1]   [296] Nieuwland J, Maughan S, Dewitte W, Scofield S, Sanz L and Murray JA. The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region. Proc Natl Acad Sci USA. 2009 106 (52):22528-22533 [PubMed]   [295] Benz JP, Stengel A, Lintala M, Lee YH, Weber A, Philippar K, Gügel IL, Kaieda S, Ikegami T, Mulo P, Soll J and Bölter B. Arabidopsis Tic62 and ferredoxin-NADP(H) oxidoreductase form light-regulated complexes that are integrated into the chloroplast redox poise. Plant Cell. 2009 21 (12):3965-3983 [PubMed]   [294] Filipenko EA, DeÄ­neko EV and ShumnyÄ­ VK. Specific features of T-DNA insertion regions in transgenic plants. Genetika. 2009 45 (11):1461-1475 [PubMed]   [293] Nakashima K, Fujita Y, Kanamori N, Katagiri T, Umezawa T, Kidokoro S, Maruyama K, Yoshida T, Ishiyama K, Kobayashi M, Shinozaki K and Yamaguchi-Shinozaki K. Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy. Plant Cell Physiol. 2009 50 (7):1345-1363 [PubMed]   [292] Schubert V, Weissleder A, Ali H, Fuchs J, Lermontova I, Meister A and Schubert I. Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana. Chromosoma. 2009 118 (5):591-605 [PubMed] [GK-allele smc1-2] [GK-allele smc3-3] [GK-allele syn3-2] [GK-allele swi1-1]   [291] Kim J, Rudella A, Ramirez Rodriguez V, Zybailov B, Olinares PD and van Wijk KJ. Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis. Plant Cell. 2009 21 (6):1669-1692 [PubMed] [GK-allele clpr4-2]   [290] Konopka-Postupolska D, Clark G, Goch G, Debski J, Floras K, Cantero A, Fijolek B, Roux S and Hennig J. The role of annexin 1 in drought stress in Arabidopsis. Plant Physiol. 2009 150 (3):1394-1410 [PubMed] [GK-allele annAt1-3]   [289] Cazalé AC, Clément M, Chiarenza S, Roncato MA, Pochon N, Creff A, Marin E, Leonhardt N and Noël LD. Altered expression of cytosolic/nuclear HSC70-1 molecular chaperone affects development and abiotic stress tolerance in Arabidopsis thaliana. J Exp Bot. 2009 60 (9):2653-2664 [PubMed] [GK-allele hsc70-3;1] [GK-allele sgt1a-2]   [288] Schweer J, Geimer S, Meurer J and Link G. Arabidopsis mutants carrying chimeric sigma factor genes reveal regulatory determinants for plastid gene expression. Plant Cell Physiol. 2009 50 (7):1382-1386 [PubMed] [GK-allele sig1-1] [GK-allele sig3-2] [GK-allele sig6-2]   [287] Zrenner R, Riegler H, Marquard CR, Lange PR, Geserick C, Bartosz CE, Chen CT and Slocum RD. A functional analysis of the pyrimidine catabolic pathway in Arabidopsis. New Phytol. 2009 183 (1):117-132 [PubMed] [GK-allele pyd1-1] [GK-allele pyd2-2]   [286] Boij P, Patel R, Garcia C, Jarvis P and Aronsson H. In vivo Studies on the Roles of Tic55-Related Proteins in Chloroplast Protein Import in Arabidopsis thaliana. Mol Plant. 2009 2 (6):1397-1409 [PubMed]   [285] Canino G, Bocian E, Barbezier N, Echeverría M, Forner J, Binder S and Marchfelder A. Arabidopsis encodes four tRNase Z enzymes. Plant Physiol. 2009 150 (3):1494-1502 [PubMed] [GK-allele trz1-1]   [284] Horie Y, Ito H, Kusaba M, Tanaka R and Tanaka A. Participation of chlorophyll b reductase in the initial step of the degradation of light-harvesting chlorophyll a/b-protein complexes in Arabidopsis. J Biol Chem. 2009 284 (26):17449-17456 [PubMed] [GK-allele nol-1]   [283] Hunt L and Gray JE. The signaling peptide EPF2 controls asymmetric cell divisions during stomatal development. Curr Biol. 2009 19 (10):864-869 [PubMed] [GK-allele epf2-2] [GK-allele sdd1-1]   [282] Robbins JC, Heller WP and Hanson MR. A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. RNA. 2009 15 (6):1142-1153 [PubMed] [GK-allele rare1-gk]   [281] Gebert M, Meschenmoser K, Svidová S, Weghuber J, Schweyen R, Eifler K, Lenz H, Weyand K and Knoop V. A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments. Plant Cell. 2009 21 (12):4018-4030 [PubMed]   [280] Dissmeyer N, Weimer AK, Pusch S, De Schutter K, Kamei CL, Nowack MK, Novak B, Duan GL, Zhu YG, De Veylder L and Schnittger A. Control of cell proliferation, organ growth, and DNA damage response operate independently of dephosphorylation of the Arabidopsis Cdk1 homolog CDKA;1. Plant Cell. 2009 21 (11):3641-3654 [PubMed]   [279] Stettler M, Eicke S, Mettler T, Messerli G, Hörtensteiner S and Zeeman SC. Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation. Mol Plant. 2009 2 (6):1233-1246 [PubMed]   [278] Chen Z, Hafidh S, Poh SH, Twell D and Berger F. Proliferation and cell fate establishment during Arabidopsis male gametogenesis depends on the Retinoblastoma protein. Proc Natl Acad Sci USA. 2009 106 (17):7257-7262 [PubMed] [GK-allele rbr-3]   [277] Rubin G, Tohge T, Matsuda F, Saito K and Scheible WR. Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell. 2009 21 (11):3567-3584 [PubMed]   [276] Wetzel CM, Harmacek LD, Yuan LH, Wopereis JL, Chubb R and Turini P. Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L. (Heynh.). J Exp Bot. 2009 60 (6):1715-1727 [PubMed] [GK-allele sppA-142] [GK-allele sppA-313] [GK-allele sppA-320]   [275] Faso C, Chen YN, Tamura K, Held M, Zemelis S, Marti L, Saravanan R, Hummel E, Kung L, Miller E, Hawes C and Brandizzi F. A missense mutation in the Arabidopsis COPII coat protein Sec24A induces the formation of clusters of the endoplasmic reticulum and Golgi apparatus. Plant Cell. 2009 21 (11):3655-3671 [PubMed]   [274] Zhao Z, Zhu Y, Erhardt M, Ruan Y and Shen WH. A Non-canonical Transferred DNA Insertion at the BRI1 Locus in Arabidopsis thaliana. J Integr Plant Biol. 2009 51 (4):367-373 [PubMed]   [273] Nakano RT, Matsushima R, Ueda H, Tamura K, Shimada T, Li L, Hayashi Y, Kondo M, Nishimura M and Hara-Nishimura I. GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 are required for maintenance of endoplasmic reticulum morphology in Arabidopsis thaliana. Plant Cell. 2009 21 (11):3672-3685 [PubMed]   [272] Kandasamy MK, McKinney EC and Meagher RB. A single vegetative actin isovariant overexpressed under the control of multiple regulatory sequences is sufficient for normal Arabidopsis development. Plant Cell. 2009 21 (3):701-718 [PubMed] [GK-allele act8-2]   [271] Schelbert S, Aubry S, Burla B, Agne B, Kessler F, Krupinska K and Hörtensteiner S. Pheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis. Plant Cell. 2009 21 (3):767-785 [PubMed] [GK-allele pph-3]   [270] Klatte M, Schuler M, Wirtz M, Fink-Straube C, Hell R and Bauer P. The analysis of Arabidopsis nicotianamine synthase mutants reveals functions for nicotianamine in seed iron loading and iron deficiency responses. Plant Physiol. 2009 150 (1):257-271 [PubMed] [GK-allele nas1-1] [GK-allele nas3-1]   [269] Mashiguchi K, Asami T and Suzuki Y. Genome-wide identification, structure and expression studies, and mutant collection of 22 early nodulin-like protein genes in Arabidopsis. Biosci Biotechnol Biochem. 2009 73 (11):2452-2459 [PubMed]   [268] Bu Q, Li H, Zhao Q, Jiang H, Zhai Q, Zhang J, Wu X, Sun J, Xie Q, Wang D and Li C. The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development. Plant Physiol. 2009 150 (1):463-481 [PubMed] [GK-allele rha2a-1]   [267] Doherty CJ, Van Buskirk HA, Myers SJ and Thomashow MF. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell. 2009 21 (3):972-984 [PubMed] [GK-allele camta5-1]   [266] Nakaminami K, Hill K, Perry SE, Sentoku N, Long JA and Karlson DT. Arabidopsis cold shock domain proteins: relationships to floral and silique development. J Exp Bot. 2009 60 (3):1047-1062 [PubMed] [GK-allele csp4-gk]   [265] Fujita Y, Nakashima K, Yoshida T, Katagiri T, Kidokoro S, Kanamori N, Umezawa T, Fujita M, Maruyama K, Ishiyama K, Kobayashi M, Nakasone S, Yamada K, Ito T, Shinozaki K and Yamaguchi-Shinozaki K. Three SnRK2 protein kinases are the main positive regulators of abscisic acid signaling in response to water stress in Arabidopsis. Plant Cell Physiol. 2009 50 (12):2123-2132 [PubMed]   [264] Tamada Y, Yun JY, Woo SC and Amasino RM. ARABIDOPSIS TRITHORAX-RELATED7 is required for methylation of lysine 4 of histone H3 and for transcriptional activation of FLOWERING LOCUS C. Plant Cell. 2009 21 (10):3257-3269 [PubMed]   [263] Kuroha T, Tokunaga H, Kojima M, Ueda N, Ishida T, Nagawa S, Fukuda H, Sugimoto K and Sakakibara H. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Plant Cell. 2009 21 (10):3152-3169 [PubMed]   [262] Rodríguez-Milla MA and Salinas J. Prefoldins 3 and 5 play an essential role in Arabidopsis tolerance to salt stress. Mol Plant. 2009 2 (3):526-534 [PubMed]   [261] Serrato AJ, Yubero-Serrano EM, Sandalio LM, Muñoz-Blanco J, Chueca A, Caballero JL and Sahrawy M. cpFBPaseII, a novel redox-independent chloroplastic isoform of fructose-1,6-bisphosphatase. Plant Cell Environ. 2009 32 (7):811-827 [PubMed] [GK-allele cfbp1-gk]   [260] Gutierrez L, Bussell JD, Pacurar DI, Schwambach J, Pacurar M and Bellini C. Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell. 2009 21 (10):3119-3132 [PubMed]   [259] Kneissl J, Wachtler V, Chua NH and Bolle C. OWL1: an Arabidopsis J-domain protein involved in perception of very low light fluences. Plant Cell. 2009 21 (10):3212-3225 [PubMed]   [258] Zhang S, Yang C, Peng J, Sun S and Wang X. GASA5, a regulator of flowering time and stem growth in Arabidopsis thaliana. Plant Mol Biol. 2009 69 (6):745-759 [PubMed] [GK-allele gasa5-1]   [257] Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki K, Ishihama Y, Hirayama T and Shinozaki K. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad Sci USA. 2009 106 (41):17588-17593 [PubMed]   [256] Kühn K, Richter U, Meyer EH, Delannoy E, de Longevialle AF, O'Toole N, Börner T, Millar AH, Small ID and Whelan J. Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana. Plant Cell. 2009 21 (9):2762-2779 [PubMed]   [255] Dean PJ, Siwiec T, Waterworth WM, Schlögelhofer P, Armstrong SJ and West CE. A novel ATM-dependent X-ray-inducible gene is essential for both plant meiosis and gametogenesis. Plant J. 2009 58 (5):791-802 [PubMed] [GK-allele xri1-1]   [254] Sato T, Maekawa S, Yasuda S, Sonoda Y, Katoh E, Ichikawa T, Nakazawa M, Seki M, Shinozaki K, Matsui M, Goto DB, Ikeda A and Yamaguchi J. CNI1/ATL31, a RING-type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings. Plant J. 2009 60 (5):852-864 [PubMed]   [253] Haussuehl K, Huesgen PF, Meier M, Dessi P, Glaser E, Adamski J and Adamska I. Eukaryotic GCP1 is a conserved mitochondrial protein required for progression of embryo development beyond the globular stage in Arabidopsis thaliana. Biochem J. 2009 423 (3):333-341 [PubMed]   [252] Kandasamy MK, McKinney EC, Deal RB, Smith AP and Meagher RB. Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair. Dev Biol. 2009 335 (1):22-32 [PubMed]   [251] Conte S, Stevenson D, Furner I and Lloyd A. Multiple antibiotic resistance in Arabidopsis is conferred by mutations in a chloroplast-localized transport protein. Plant Physiol. 2009 151 (2):559-573 [PubMed]   [250] Szydlowski N, Ragel P, Raynaud S, Lucas MM, Roldán I, Montero M, Muñoz FJ, Ovecka M, Bahaji A, Planchot V, Pozueta-Romero J, D'Hulst C and Mérida A. Starch granule initiation in Arabidopsis requires the presence of either class IV or class III starch synthases. Plant Cell. 2009 21 (8):2443-2457 [PubMed] [GK-allele ssIV-1]   [249] Jang S, Torti S and Coupland G. Genetic and spatial interactions between FT, TSF and SVP during the early stages of floral induction in Arabidopsis. Plant J. 2009 60 (4):614-625 [PubMed]   [248] Ni DA, Sozzani R, Blanchet S, Domenichini S, Reuzeau C, Cella R, Bergounioux C and Raynaud C. The Arabidopsis MCM2 gene is essential to embryo development and its over-expression alters root meristem function. New Phytol. 2009 184 (2):311-322 [PubMed]   [247] Ream TS, Haag JR, Wierzbicki AT, Nicora CD, Norbeck AD, Zhu JK, Hagen G, Guilfoyle TJ, Pasa-Tolić L and Pikaard CS. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol Cell. 2009 33 (2):192-203 [PubMed] [GK-allele nrpe5-1]   [246] Bang WY, Hata A, Jeong IS, Umeda T, Masuda T, Chen J, Yoko I, Suwastika IN, Kim DW, Im CH, Lee BH, Lee Y, Lee KW, Shiina T and Bahk JD. AtObgC, a plant ortholog of bacterial Obg, is a chloroplast-targeting GTPase essential for early embryogenesis. Plant Mol Biol. 2009 71 (4-5):379-390 [PubMed]   [245] Fornara F, Panigrahi KC, Gissot L, Sauerbrunn N, Rühl M, Jarillo JA and Coupland G. Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response. Dev Cell. 2009 17 (1):75-86 [PubMed]   [244] Chen Z, Noir S, Kwaaitaal M, Hartmann HA, Wu MJ, Mudgil Y, Sukumar P, Muday G, Panstruga R and Jones AM. Two seven-transmembrane domain MILDEW RESISTANCE LOCUS O proteins cofunction in Arabidopsis root thigmomorphogenesis. Plant Cell. 2009 21 (7):1972-1991 [PubMed]   [243] Delannoy E, Le Ret M, Faivre-Nitschke E, Estavillo GM, Bergdoll M, Taylor NL, Pogson BJ, Small I, Imbault P and Gualberto JM. Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation. Plant Cell. 2009 21 (7):2058-2071 [PubMed]   [242] Wiszniewski AA, Zhou W, Smith SM and Bussell JD. Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins. Plant Mol Biol. 2009 69 (5):503-515 [PubMed] [GK-allele aae12-1] [GK-allele bzo1-5]   [241] Ogawa T, Nishimura K, Aoki T, Takase H, Tomizawa K, Ashida H and Yokota A. A phosphofructokinase B-type carbohydrate kinase family protein, NARA5, for massive expressions of plastid-encoded photosynthetic genes in Arabidopsis. Plant Physiol. 2009 151 (1):114-128 [PubMed]   [240] Roa H, Lang J, Culligan KM, Keller M, Holec S, Cognat V, Montané MH, Houlné G and Chabouté ME. Ribonucleotide reductase regulation in response to genotoxic stress in Arabidopsis. Plant Physiol. 2009 151 :461-471 [PubMed] [GK-allele e2fa-1]   [239] Semchuk NM, Lushchak OV, Falk J, Krupinska K and Lushchak VI. Inactivation of genes, encoding tocopherol biosynthetic pathway enzymes, results in oxidative stress in outdoor grown Arabidopsis thaliana. Plant Physiol Biochem. 2009 47 (5):384-390 [PubMed] [GK-allele vte1-2]   [238] Schmitz AJ, Glynn JM, Olson BJ, Stokes KD and Osteryoung KW. Arabidopsis FtsZ2-1 and FtsZ2-2 Are Functionally Redundant, But FtsZ-Based Plastid Division Is Not Essential for Chloroplast Partitioning or Plant Growth and Development. Mol Plant. 2009 2 (6):1211-1222 [PubMed] [GK-allele ftsZ2-1]   [237] Krizek B. AINTEGUMENTA and AINTEGUMENTA-LIKE6 act redundantly to regulate Arabidopsis floral growth and patterning. Plant Physiol. 2009 150 (4):1916-1929 [PubMed] [GK-allele ail6-4]   [236] Meinke D, Sweeney C and Muralla R. Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes. PLoS ONE. 2009 4 (10):e7386 [PubMed]   [235] Knill T, Reichelt M, Paetz C, Gershenzon J and Binder S. Arabidopsis thaliana encodes a bacterial-type heterodimeric isopropylmalate isomerase involved in both Leu biosynthesis and the Met chain elongation pathway of glucosinolate formation. Plant Mol Biol. 2009 71 (3):227-239 [PubMed] [GK-allele lsu1-3]   [234] Brown DM, Zhang Z, Stephens E, Dupree P and Turner SR. Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis. Plant J. 2009 57 :732-746 [PubMed] [GK-allele irx10-1]   [233] Ogawa M, Kay P, Wilson S and Swain SM. ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis. Plant Cell. 2009 21 :216-233 [PubMed] [GK-allele adpg2-2]   [232] Kötting O, Santelia D, Edner C, Eicke S, Marthaler T, Gentry MS, Comparot-Moss S, Chen J, Smith AM, Steup M, Ritte G and Zeeman SC. STARCH-EXCESS4 is a laforin-like Phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana. Plant Cell. 2009 21 :334-346 [PubMed] [GK-allele isa3-2]   [231] Szumlanski AL and Nielsen E. The Rab GTPase RabA4d regulates pollen tube tip growth in Arabidopsis thaliana. Plant Cell. 2009 21 :526-544 [PubMed] [GK-allele raba4d-1]   [230] Simpson C, Thomas C, Findlay K, Bayer E and Maule AJ. An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking. Plant Cell. 2009 21 :581-594 [PubMed] [GK-allele pdcb1-gk]   [229] Zhang W, Zhou RG, Gao YJ, Zheng SZ, Xu P, Zhang SQ and Sun DY. Molecular and genetic evidence for the key role of AtCaM3 in heat-shock signal transduction in Arabidopsis. Plant Physiol. 2009 149 :1773-1784 [PubMed] [GK-allele cam4-1]   [228] Hansson A, Jensen PE. Chlorophyll limitation in plants remodels and balances the photosynthetic apparatus by changing the accumulation of photosystems I and II through two different approaches. Physiol Plant. 2009 135 (2):214-228 [PubMed] [GK-allele chl27-1]   [227] Yuan L, Graff L, Loquoe D, Kojima S, Tsuchiya YN, Takahashi H, von Wiroen N AtAMT1;4, a pollen-specific high-affinity ammonium transporter of the plasma membrane in Arabidopsis. Plant Cell Physiol. 2009 50 (1):13-25 [PubMed] [GK-allele atam14-4] [GK-allele atam14-5]   [226] Kato Y, Miwa K, Takano J, Wada M, Fujiwara T. Highly boron deficiency-tolerant plants generated by enhanced expression of NIP5;1, a boric acid channel. Plant Cell Physiol. 2009 50 (1):58-66 [PubMed] [GK-line 297G11] [GK-allele nip5-1ox1]   [225] Lahmy S, Pontier D, Cavel E, Vega D, El-Shami M, Kanno T, Lagrange T. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc Natl Acad Sci USA. 2009 106 (3):941-946 [PubMed] [GK-allele nrpe5c-1]   [224] Hartung F, Suer S, Knoll A, Wurz-Wildersinn R, Puchta H. Topoisomerase 3α and RMI1 Suppress Somatic Crossovers and Are Essential for Resolution of Meiotic Recombination Intermediates in Arabidopsis thaliana. PLoS Genet. 2008 4 (12):e1000285 [PubMed] [GK-allele top3α-2]   [223] Gao P, Xin Z and Zheng ZL. The OSU1/QUA2/TSD2-encoded putative methyltransferase is a critical modulator of carbon and nitrogen nutrient balance response in Arabidopsis. PLoS ONE. 2008 3 (1):e1387 [PubMed]   [222] Daxinger L, Hunter B, Sheikh M, Jauvion V, Gasciolli V, Vaucheret H, Matzke M and Furner I. Unexpected silencing effects from T-DNA tags in Arabidopsis. Trends Plant Sci. 2008 13 (1):4-6 [PubMed] [GK-allele dcl3-4] [GK-allele dcl4-2]   [221] Schwarz S, Grande AV, Bujdoso N, Saedler H and Huijser P. The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis. Plant Mol Biol. 2008 67 :183-195 [PubMed] [GK-allele spl9-3]   [220] Lee MH, Kim B, Song SK, Heo JO, Yu NI, Lee SA, Kim M, Kim DG, Sohn SO, Lim CE, Chang KS, Lee MM and Lim J. Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol Biol. 2008 67 (6):659-670 [PubMed] [GK-allele scl11-1] [GK-allele scl11-2] [GK-allele scl14-2] [GK-allele scl15-2] [GK-allele scl31-1]   [219] Kim KC, Lai Z, Fan B and Chen Z. Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Plant Cell. 2008 20 (9):2357-2371 [PubMed] [GK-allele wrky62-1]   [218] Yuri Trusov, Wei Zhang, Sarah M. Assmann and José Ramón Botella. Ggamma1 + Ggamma2 not equal to Gbeta: heterotrimeric G protein Ggamma-deficient mutants do not recapitulate all phenotypes of Gbeta-deficient mutants. Plant Physiol. 2008 147 :636-649 [PubMed] [GK-allele agg1-2] [GK-allele agg2-2]   [217] Nguyen Q. Phan, Sang-Jin Kim, and Diane C. Bassham. Overexpression of Arabidopsis Sorting Nexin AtSNX2b Inhibits Endocytic Trafficking to the Vacuole. Mol Plant. 2008 1 :961 - 976 [PubMed]   [216] Dyachok J, Shao MR, Vaughn K, Bowling A, Facette M, Djakovic S, Clark L, Smith L. Plasma Membrane-Associated SCAR Complex Subunits Promote Cortical F-Actin Accumulation and Normal Growth Characteristics in Arabidopsis Roots. Mol Plant. 2008 Nov; 1 :990 - 1006 [PubMed]   [215] Fulton DC, Stettler M, Mettler T, Vaughan CK, Li J, Francisco P, Gil M, Reinhold H, Eicke S, Messerli G, Dorken G, Halliday K, Smith AM, Smith SM and Zeeman SC. Beta-AMYLASE4, a noncatalytic protein required for starch breakdown, acts upstream of three active beta-amylases in Arabidopsis chloroplasts. Plant Cell. 2008 20 :1040-1058 [PubMed]   [214] Lermontova I, Fuchs J and Schubert I. The Arabidopsis checkpoint protein Bub3.1 is essential for gametophyte development. Front Biosci. 2008 13 :5202-5211 [PubMed]   [213] Latrasse D, Benhamed M, Henry Y, Domenichini S, Kim W, Zhou DX and Delarue M. The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis. BMC Plant Biol. 2008 8 :121 [PubMed]   [212] Boccalandro HE, De Simone SN, Bergmann-Honsberger A, Schepens I, Fankhauser C, Casal JJ. PHYTOCHROME KINASE SUBSTRATE1 regulates root phototropism and gravitropism. Plant Physiol. 2008 146 (1):108-15 [PubMed] [GK-allele pks1-2]   [211] Szoekely G, Abrahoam E, Csoeplo A, Rigoo G, Zsigmond L, Csiszoar J, Ayaydin F, Strizhov N, Joasik J, Schmelzer E, Koncz C, Szabados L Duplicated P5CS genes of Arabidopsis play distinct roles in stress regulation and developmental control of proline biosynthesis. Plant J. 2008 53 (1):11-28 [PubMed]   [210] Watanabe N, Lam E BAX Inhibitor-1 Modulates Endoplasmic Reticulum Stress-mediated Programmed Cell Death in Arabidopsis. J Biol Chem. 2008 283 (6):3200-10 [PubMed]   [209] Lange PR, Geserick C, Tischendorf G, Zrenner R Functions of chloroplastic adenylate kinases in Arabidopsis. Plant Physiol. 2008 146 (2):492-504 [PubMed] [GK-allele amk2-2]   [208] Ding L, Pandey S, Assmann SM Arabidopsis extra-large G proteins (XLGs) regulate root morphogenesis. Plant J. 2008 53 (2):248-63 [PubMed]   [207] Comella P, Pontvianne F, Lahmy S, Vignols F, Barbezier N, Debures A, Jobet E, Brugidou E, Echeverria M, Soaez-Voasquez J Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3'ETS in Arabidopsis. Nucleic Acids Res. 2008 36 (4):1163-75 [PubMed]   [206] Knill T, Schuster J, Reichelt M, Gershenzon J, Binder S. Arabidopsis branched-chain aminotransferase 3 functions in both amino acid and glucosinolate biosynthesis. Plant Physiol. 2008 146 (3):1028-39 [PubMed] [GK-allele bcat3-1]   [205] Tapia-Loopez R, Garco­a-Ponce B, Dubrovsky JG, Garay-Arroyo A, Poerez-Ruo­z RV, Kim SH, Acevedo F, Pelaz S, Alvarez-Buylla ER. An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in Arabidopsis. Plant Physiol. 2008 146 (3):1182-92 [PubMed] [GK-allele xal1-2]   [204] Raffaele S, Vailleau F, Loeger A, Jouboes J, Miersch O, Huard C, Bloee E, Mongrand S, Domergue F, Roby D A MYB transcription factor regulates very-long-chain fatty acid biosynthesis for activation of the hypersensitive cell death response in Arabidopsis. Plant Cell. 2008 20 (3):752-67 [PubMed]   [203] Rieu I, Ruiz-Rivero O, Fernandez-Garcia N, Griffiths J, Powers SJ, Gong F, Linhartova T, Eriksson S, Nilsson O, Thomas SG, Phillips AL, Hedden P The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle. Plant J. 2008 53 (3):488-504 [PubMed]   [202] Ren H, Santner A, del Pozo JC, Murray JA, Estelle M Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases. Plant J. 2008 53 (5):705-16 [PubMed]   [201] Hoeberichts FA, Vaeck E, Kiddle G, Coppens E, van de Cotte B, Adamantidis A, Ormenese S, Foyer CH, Zabeau M, Inzoe D, Poerilleux C, Van Breusegem F, Vuylsteke M A Temperature-sensitive mutation in the Arabidopsis thaliana phosphomannomutase gene disrupts protein glycosylation and triggers cell death. J Biol Chem. 2008 283 (9):5708-18 [PubMed]   [200] Ronceret A, Gadea-Vacas J, Guilleminot J, Lincker F, Delorme V, Lahmy S, Pelletier G, Chaboutoe ME, Devic M The first zygotic division in Arabidopsis requires de novo transcription of thymidylate kinase. Plant J. 2008 53 (5):776-89 [PubMed]   [199] Naponelli V, Noiriel A, Ziemak MJ, Beverley SM, Lye LF, Plume AM, Botella JR, Loizeau K, Ravanel S, Roebeilloe F, de Croecy-Lagard V, Hanson AD. Phylogenomic and functional analysis of pterin-4a-carbinolamine dehydratase family (COG2154) proteins in plants and microorganisms. Plant Physiol. 2008 146 (4):1515-27 [PubMed] [GK-allele pcd-gk1]   [198] Pinon V, Etchells JP, Rossignol P, Collier SA, Arroyo JM, Martienssen RA, Byrne ME. Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development. 2008 135 (7):1315-1324 [PubMed] [GK-allele pgy2-2]   [197] Merkouropoulos G, Andreasson E, Hess D, Boller T, Peck SC An Arabidopsis protein phosphorylated in response to microbial elicitation, AtPHOS32, is a substrate of MAP kinases 3 and 6. J Biol Chem. 2008 283 (16):10493-9 [PubMed]   [196] Yoshida T, Sakuma Y, Todaka D, Maruyama K, Qin F, Mizoi J, Kidokoro S, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system. Biochem Biophys Res Commun. 2008 368 (3):515-21 [PubMed]   [195] Choavez Montes RA, Ranocha P, Martinez Y, Minic Z, Jouanin L, Marquis M, Saulnier L, Fulton LM, Cobbett CS, Bitton F, Renou JP, Jauneau A, Goffner D Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity. Plant Physiol. 2008 147 (1):63-77 [PubMed]   [194] Shimizu H, Peng L, Myouga F, Motohashi R, Shinozaki K, Shikanai T CRR23/NdhL is a subunit of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Plant Cell Physiol. 2008 49 (5):835-42 [PubMed]   [193] Hoala M, Cole R, Synek L, Drdovoa E, Pecenkovoa T, Nordheim A, Lamkemeyer T, Madlung J, Hochholdinger F, Fowler JE, Zoarskoy V An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Plant Cell. 2008 20 (5):1330-45 [PubMed]   [192] Lange H, Holec S, Cognat V, Pieuchot L, Le Ret M, Canaday J, Gagliardi D Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana. Mol Cell Biol. 2008 28 (9):3038-44 [PubMed]   [191] Jasinski M, Sudre D, Schansker G, Schellenberg M, Constant S, Martinoia E, Bovet L. AtOSA1, a member of the Abc1-like family, as a new factor in cadmium and oxidative stress response. Plant Physiol. 2008 147 (2):719-731 [PubMed] [GK-allele atosa1-2]   [190] Wang G, Ellendorff U, Kemp B, Mansfield JW, Forsyth A, Mitchell K, Bastas K, Liu CM, Woods-Toer A, Zipfel C, de Wit PJ, Jones JD, Toer M, Thomma BP. A genome-wide functional investigation into the roles of receptor-like proteins in Arabidopsis. Plant Physiol. 2008 147 (2):503-17 [PubMed]   [189] Fujisaki K, Kobayashi S, Tsujimoto Y, Naito S, Ishikawa M. Analysis of tobamovirus multiplication in Arabidopsis thaliana mutants defective in TOM2A homologues. J Gen Virol. 2008 89 (6):1519-1524 [PubMed] [GK-allele tom2ah3-1]   [188] Zhao Q, Brkljacic J, Meier I Two distinct interacting classes of nuclear envelope-associated coiled-coil proteins are required for the tissue-specific nuclear envelope targeting of Arabidopsis RanGAP. Plant Cell. 2008 20 (6):1639-51 [PubMed]   [187] Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Roetsch G, Weigel D Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci USA. 2008 105 (25):8795-800 [PubMed]   [186] Dohmann EM, Levesque MP, De Veylder L, Reichardt I, Joergens G, Schmid M, Schwechheimer C The Arabidopsis COP9 signalosome is essential for G2 phase progression and genomic stability. Development. 2008 135 (11):2013-22 [PubMed]   [185] Steffen JG, Kang IH, Portereiko MF, Lloyd A, Drews GN AGL61 interacts with AGL80 and is required for central cell development in Arabidopsis. Plant Physiol. 2008 148 (1):259-68 [PubMed]   [184] Patel R, Hsu SC, Boedard J, Inoue K, Jarvis P. The Omp85-related chloroplast outer envelope protein OEP80 is essential for viability in Arabidopsis. Plant Physiol. 2008 148 (1):235-45 [PubMed]   [183] Onodera Y, Nakagawa K, Haag JR, Pikaard D, Mikami T, Ream T, Ito Y, Pikaard CS. Sex-biased lethality or transmission of defective transcription machinery in Arabidopsis. Genetics. 2008 Sep;180 (1):207-18 [PubMed]   [182] Rieu I, Eriksson S, Powers SJ, Gong F, Griffiths J, Woolley L, Benlloch R, Nilsson O, Thomas SG, Hedden P, Phillips AL. Genetic analysis reveals that C19-GA 2-oxidation is a major gibberellin inactivation pathway in Arabidopsis. Plant Cell. 2008 20 (9):2420-36 [PubMed]   [181] Iwata Y, Fedoroff NV, Koizumi N Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response. Plant Cell. 2008 Nov;20 (11):3107-21 [PubMed]   [180] Jakoby MJ, Falkenhan D, Mader MT, Brininstool G, Wischnitzki E, Platz N, Hudson A, Huelskamp M, Larkin J, Schnittger A. Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. Plant Physiol. 2008 148 (3):1583-602 [PubMed] [GK-allele gl3-3]   [179] Myouga F, Hosoda C, Umezawa T, Iizumi H, Kuromori T, Motohashi R, Shono Y, Nagata N, Ikeuchi M, Shinozaki K A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in arabidopsis. Plant Cell. 2008 20 (11):3148-62 [PubMed]   [178] Yang S, Johnston N, Talideh E, Mitchell S, Jeffree C, Goodrich J, Ingram G. The endosperm-specific ZHOUPI gene of Arabidopsis thaliana regulates endosperm breakdown and embryonic epidermal development. Development. 2008 135 (21):3501-9 [PubMed]   [177] Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, Morita MT, Spitzer C, Otegui MS, Nakano A, Ueda T A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana. Plant Cell. 2008 20 (11):3006-21 [PubMed]   [176] Loudet O, Michael TP, Burger BT, Le Mettoe C, Mockler TC, Weigel D, Chory J A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proc Natl Acad Sci USA. 2008 105 (44):17193-8 [PubMed]   [175] Palmieri L, Santoro A, Carrari F, Blanco E, Nunes-Nesi A, Arrigoni R, Genchi F, Fernie AR, Palmieri F Identification and characterization of ADNT1, a novel mitochondrial adenine nucleotide transporter from arabidopsis. Plant Physiol. 2008 148 (4):1797-808 [PubMed]   [174] Streb S, Delatte T, Umhang M, Eicke S, Schorderet M, Reinhardt D, Zeeman SC Starch granule biosynthesis in Arabidopsis is abolished by removal of all debranching enzymes but restored by the subsequent removal of an endoamylase. Plant Cell. 2008 20 (12):3448-66 [PubMed]   [173] Cheng Y, Qin G, Dai X, Zhao Y NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. Proc Natl Acad Sci USA. 2008 105 (52):21017-22 [PubMed]   [172] Rautengarten C, Usadel B, Neumetzler L, Hartmann J, Boessis D, Altmann T A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats. Plant J. 2008 54 (3):466-80 [PubMed]   [171] Wan J, Zhang XC, Neece D, Ramonell KM, Clough S, Kim SY, Stacey MG, Stacey G. A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis. Plant Cell. 2008 20 (2):471-81 [PubMed]   [170] Phillips MA, D'Auria JC, Gershenzon J, Pichersky E. The Arabidopsis thaliana type I Isopentenyl Diphosphate Isomerases are targeted to multiple subcellular compartments and have overlapping functions in isoprenoid biosynthesis. Plant Cell. 2008 20 (3):677-696 [PubMed] [GK-allele idi1-1]   [169] Owens DK, Alerding AB, Crosby KC, Bandara AB, Westwood JH, Winkel BS. Functional analysis of a predicted flavonol synthase gene family in Arabidopsis. Plant Physiol. 2008 147 (3):1046-1061 [PubMed] [GK-allele fls2] [GK-allele fls5]   [168] Mudd EA, Sullivan S, Gisby MF, Mironov A, Kwon CS, Chung WI, Day A. A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis. J Exp Bot. 2008 59 (10):2597-2610 [PubMed] [GK-allele rneEG-2]   [167] Albrecht C, Russinova E, Kemmerling B, Kwaaitaal M, de Vries SC. Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways. Plant Physiol. 2008 148 (1):611-619 [PubMed] [GK-allele serk1-3]   [166] Uehara T, Okushima Y, Mimura T, Tasaka M, Fukaki H. Domain II mutations in CRANE/IAA18 suppress lateral root formation and affect shoot development in Arabidopsis thaliana. Plant Cell Physiol. 2008 49 (7):1025-1038 [PubMed] [GK-allele iaa18-gk]   [165] Stenbaek A, Hansson A, Wulff RP, Hansson M, Dietz KJ, Jensen PE. NADPH-dependent thioredoxin reductase and 2-Cys peroxiredoxins are needed for the protection of Mg-protoporphyrin monomethyl ester cyclase. FEBS Lett. 2008 582 (18):2773-2778 [PubMed] [GK-allele ntrc-3]   [164] Lee Y, Kim ES, Choi Y, Hwang I, Staiger CJ, Chung YY, Lee Y The Arabidopsis phosphatidylinositol 3-kinase is important for pollen development. Plant Physiol. 2008 147 (4):1886-97 [PubMed] [GK-allele vps34-2]   [163] Matsui A, Ishida J, Morosawa T, Mochizuki Y, Kaminuma E, Endo TA, Okamoto M, Nambara E, Nakajima M, Kawashima M, Satou M, Kim JM, Kobayashi N, Toyoda T, Shinozaki K, Seki M Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array. Plant Cell Physiol. 2008 49 (8):1135-49 [PubMed] [GK-allele rdr4-1] [GK-allele rdr5-1]   [162] Staal J, Kaliff M, Dewaele E, Persson M, Dixelius C RLM3, a TIR domain encoding gene involved in broad-range immunity of Arabidopsis to necrotrophic fungal pathogens. Plant J. 2008 55 (2):188-200 [PubMed] [GK-allele rlm3-1] [GK-allele rlm3-2]   [161] Kondou Y, Nakazawa M, Kawashima M, Ichikawa T, Yoshizumi T, Suzuki K, Ishikawa A, Koshi T, Matsui R, Muto S, Matsui M RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth. Plant Physiol. 2008 147 (4):1924-35 [PubMed] [GK-allele rge1-1]   [160] Sirpioe S, Khrouchtchova A, Allahverdiyeva Y, Hansson M, Fristedt R, Vener AV, Scheller HV, Jensen PE, Haldrup A, Aro EM AtCYP38 ensures early biogenesis, correct assembly and sustenance of photosystem II. Plant J. 2008 55 (4):639-51 [PubMed] [GK-allele GABIcyp38]   [159] Svennerstam H, Ganeteg U, Noesholm T. Root uptake of cationic amino acids by Arabidopsis depends on functional expression of amino acid permease 5. New Phytol. 2008 180 (3):620-30 [PubMed] [GK-allele app1-1] [GK-allele app1-2] [GK-line 769F01] [GK-line 036F08]   [158] Kwon KC, Cho MH. Deletion of the chloroplast-localized AtTerC gene product in Arabidopsis thaliana leads to loss of the thylakoid membrane and to seedling lethality. Plant J. 2008 55 (3):428-442 [PubMed] [GK-allele atterC-2]   [157] Stepanova AN, Robertson-Hoyt J, Yun J, Benavente LM, Xie DY, Dolezal K, Schlereth A, Joergens G, Alonso JM TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell. 2008 133 (1):177-91 [PubMed]   [156] Hara K, Kajita R, Torii KU, Bergmann DC and Kakimoto T. The secretory peptide gene EPF1 enforces the stomatal one-cell-spacing rule. Genes Dev. 2007 21 (14):1720-1725 [PubMed] [GK-allele sdd1-1]   [155] Jiang L, Xia M, Strittmatter LI and Makaroff CA. The Arabidopsis cohesin protein SYN3 localizes to the nucleolus and is essential for gametogenesis. Plant J. 2007 50 :1020-1034 [PubMed] [GK-allele syn3-2]   [154] Eyüboglu B, Pfister K, Haberer G, Chevalier D, Fuchs A, Mayer KF and Schneitz K. Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana. BMC Plant Biol. 2007 7 :16 [PubMed]   [153] Sirpiö S, Allahverdiyeva Y, Suorsa M, Paakkarinen V, Vainonen J, Battchikova N and Aro EM. TLP18.3, a novel thylakoid lumen protein regulating photosystem II repair cycle. Biochem J. 2007 406 :415-425 [PubMed]   [152] Moeder W, Del Pozo O, Navarre DA, Martin GB, Klessig DF Aconitase plays a role in regulating resistance to oxidative stress and cell death in Arabidopsis and Nicotiana benthamiana. Plant Mol Biol. 2007 63 (2):273-87 [PubMed]   [151] De Schutter K, Joubes J, Cools T, Verkest A, Corellou F, Babiychuk E, Van Der Schueren E, Beeckman T, Kushnir S, Inze D, De Veylder L Arabidopsis WEE1 Kinase Controls Cell Cycle Arrest in Response to Activation of the DNA Integrity Checkpoint. Plant Cell. 2007 19 (1):211-25 [PubMed]   [150] Charng YY, Liu HC, Liu NY, Chi WT, Wang CN, Chang SH, Wang TT A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis. Plant Physiol. 2007 143 (1):251-62 [PubMed]   [149] Roldan I, Wattebled F, Mercedes Lucas M, Delvalle D, Planchot V, Jimenez S, Perez R, Ball S, D'Hulst C, Merida A The phenotype of soluble starch synthase IV defective mutants of Arabidopsis thaliana suggests a novel function of elongation enzymes in the control of starch granule formation. Plant J. 2007 49 (3):492-504 [PubMed]   [148] Uhrig JF, Mutondo M, Zimmermann I, Deeks MJ, Machesky LM, Thomas P, Uhrig S, Rambke C, Hussey PJ, Hulskamp M The role of Arabidopsis SCAR genes in ARP2-ARP3-dependent cell morphogenesis. Development. 2007 134 (5):967-77 [PubMed]   [147] Sieber P, Wellmer F, Gheyselinck J, Riechmann JL, Meyerowitz EM Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness. Development. 2007 134 (6):1051-60 [PubMed]   [146] Aguilar-Martinez JA, Poza-Carrion C, Cubas P Arabidopsis BRANCHED1 Acts as an Integrator of Branching Signals within Axillary Buds. Plant Cell. 2007 19 (2):458-72 [PubMed]   [145] Fujii H, Verslues PE, Zhu JK Identification of two protein kinases required for abscisic Acid regulation of seed germination, root growth, and gene expression in Arabidopsis. Plant Cell. 2007 19 (2):485-94 [PubMed]   [144] Fleury D, Himanen K, Cnops G, Nelissen H, Boccardi TM, Maere S, Beemster GT, Neyt P, Anami S, Robles P, Micol JL, Inze D, Van Lijsebettens M The Arabidopsis thaliana Homolog of Yeast BRE1 Has a Function in Cell Cycle Regulation during Early Leaf and Root Growth. Plant Cell. 2007 19 (2):417-32 [PubMed]   [143] Liu Y, Koornneef M, Soppe WJ The Absence of Histone H2B Monoubiquitination in the Arabidopsis hub1 (rdo4) Mutant Reveals a Role for Chromatin Remodeling in Seed Dormancy. Plant Cell. 2007 19 (2):433-44 [PubMed]   [142] Lang C, Popko J, Wirtz M, Hell R, Herschbach C, Kreuzwieser J, Rennenberg H, Mendel RR, Hansch R Sulphite oxidase as key enzyme for protecting plants against sulphur dioxide. Plant Cell Environ. 2007 30 (4):447-55 [PubMed]   [141] Bieniawska Z, Paul Barratt DH, Garlick AP, Thole V, Kruger NJ, Martin C, Zrenner R, Smith AM Analysis of the sucrose synthase gene family in Arabidopsis. Plant J. 2007 49 (5):810-28 [PubMed]   [140] Messerli G, Partovi Nia V, Trevisan M, Kolbe A, Schauer N, Geigenberger P, Chen J, Davison AC, Fernie AR, Zeeman SC Rapid Classification of Phenotypic Mutants of Arabidopsis via Metabolite Fingerprinting. Plant Physiol. 2007 143 (4):1484-92 [PubMed]   [139] Khan JA, Wang Q, Sjolund RD, Schulz A, Thompson GA An early nodulin-like protein accumulates in the sieve element plasma membrane of Arabidopsis. Plant Physiol. 2007 143 (4):1576-89 [PubMed]   [138] Deng W, Liu C, Pei Y, Deng X, Niu L, Cao X Involvement of the Histone Acetyltransferase AtHAC1 in the Regulation of Flowering Time via Repression of FLOWERING LOCUS C in Arabidopsis. Plant Physiol. 2007 143 (4):1660-8 [PubMed]   [137] Conti L, Bradley D. TERMINAL FLOWER1 is a mobile signal controlling Arabidopsis architecture. Plant Cell. 2007 19 (3):767-778 [PubMed] [GK-allele tfl1-18]   [136] Hooker TS, Lam P, Zheng H, Kunst L. A core subunit of the RNA-processing/degrading exosome specifically influences cuticular wax biosynthesis in Arabidopsis. Plant Cell. 2007 19 (3):904-913 [PubMed] [GK-allele rrp45a]   [135] Duy D, Wanner G, Meda AR, von Wiren N, Soll J, Philippar K PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport. Plant Cell. 2007 19 (3):986-1006 [PubMed]   [134] Kesarwani M, Yoo J, Dong X Genetic interactions of TGA transcription factors in the regulation of pathogenesis-related genes and disease resistance in Arabidopsis. Plant Physiol. 2007 144 (1):336-46 [PubMed]   [133] Peiter E, Montanini B, Gobert A, Pedas P, Husted S, Maathuis FJ, Blaudez D, Chalot M, Sanders D A secretory pathway-localized cation diffusion facilitator confers plant manganese tolerance. Proc Natl Acad Sci USA. 2007 104 (20):8532-7 [PubMed]   [132] Schwager KM, Calderon-Villalobos LI, Dohmann EM, Willige BC, Knierer S, Nill C, Schwechheimer C Characterization of the VIER F-BOX PROTEINE genes from Arabidopsis reveals their importance for plant growth and development. Plant Cell. 2007 19 (4):1163-78 [PubMed]   [131] Willige BC, Ghosh S, Nill C, Zourelidou M, Dohmann EM, Maier A, Schwechheimer C. The DELLA domain of GA INSENSITIVE mediates the interaction with the GA INSENSITIVE DWARF1A gibberellin receptor of Arabidopsis. Plant Cell. 2007 19 (4):1209-1220 [PubMed] [GK-allele gid1c-2]   [130] Schult K, Meierhoff K, Paradies S, Toller T, Wolff P, Westhoff P The nuclear-encoded factor HCF173 is involved in the initiation of translation of the psbA mRNA in Arabidopsis thaliana. Plant Cell. 2007 19 (4):1329-46 [PubMed]   [129] Kovacheva S, Bedard J, Wardle A, Patel R, Jarvis P Further in vivo studies on the role of the molecular chaperone, Hsp93, in plastid protein import. Plant J. 2007 50 (2):364-79 [PubMed]   [128] Bessire M, Chassot C, Jacquat AC, Humphry M, Borel S, Petetot JM, Metraux JP, Nawrath C A permeable cuticle in Arabidopsis leads to a strong resistance to Botrytis cinerea. EMBO J. 2007 26 (8):2158-68 [PubMed]   [127] Fleurdepine S, Deragon JM, Devic M, Guilleminot J, Bousquet-Antonelli C A bona fide La protein is required for embryogenesis in Arabidopsis thaliana. Nucleic Acids Res. 2007 35 (10):3306-21 [PubMed]   [126] Pracharoenwattana I, Cornah JE, Smith SM Arabidopsis peroxisomal malate dehydrogenase functions in beta-oxidation but not in the glyoxylate cycle. Plant J. 2007 50 (3):381-90 [PubMed]   [125] Anand A, Krichevsky A, Schornack S, Lahaye T, Tzfira T, Tang Y, Citovsky V, Mysore KS Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants. Plant Cell. 2007 19 (5):1695-708 [PubMed]   [124] Mouille G, Ralet MC, Cavelier C, Eland C, Effroy D, Hematy K, McCartney L, Truong HN, Gaudon V, Thibault JF, Marchant A, Hofte H Homogalacturonan synthesis in Arabidopsis thaliana requires a Golgi-localized protein with a putative methyltransferase domain. Plant J. 2007 50 (4):605-14 [PubMed]   [123] Ulker B, Shahid Mukhtar M, Somssich IE The WRKY70 transcription factor of Arabidopsis influences both the plant senescence and defense signaling pathways. Planta. 2007 226 (1):125-37 [PubMed]   [122] Deeks MJ, Rodrigues C, Dimmock S, Ketelaar T, Maciver SK, Malho R, Hussey PJ Arabidopsis CAP1 - a key regulator of actin organisation and development. J Cell Sci. 2007 120 (Pt 15):2609-18 [PubMed]   [121] Nafisi M, Goregaoker S, Botanga CJ, Glawischnig E, Olsen CE, Halkier BA, Glazebrook J Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis. Plant Cell. 2007 19 (6):2039-52 [PubMed]   [120] Finlayson SA Arabidopsis Teosinte Branched1-like 1 regulates axillary bud outgrowth and is homologous to monocot Teosinte Branched1. Plant Cell Physiol. 2007 48 (5):667-77 [PubMed]   [119] Loudet O, Saliba-Colombani V, Camilleri C, Calenge F, Gaudon V, Koprivova A, North KA, Kopriva S, Daniel-Vedele F Natural variation for sulfate content in Arabidopsis thaliana is highly controlled by APR2. Nat Genet. 2007 39 (7):896-900 [PubMed]   [118] Edner C, Li J, Albrecht T, Mahlow S, Hejazi M, Hussain H, Kaplan F, Guy C, Smith SM, Steup M, Ritte G Glucan, water dikinase activity stimulates breakdown of starch granules by plastidial beta-amylases. Plant Physiol. 2007 145 (1):17-28 [PubMed]   [117] Brosnan CA, Mitter N, Christie M, Smith NA, Waterhouse PM, Carroll BJ Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis. Proc Natl Acad Sci USA. 2007 104 (37):14741-6 [PubMed]   [116] Garzoon M, Eifler K, Faust A, Scheel H, Hofmann K, Koncz C, Yephremov A, Bachmair A PRT6/At5g02310 encodes an Arabidopsis ubiquitin ligase of the N-end rule pathway with arginine specificity and is not the CER3 locus. FEBS Lett. 2007 581 (17):3189-96 [PubMed]   [115] Gremski K, Ditta G, Yanofsky MF The HECATE genes regulate female reproductive tract development in Arabidopsis thaliana. Development. 2007 134 (20):3593-601 [PubMed]   [114] Do CT, Pollet B, Thoevenin J, Sibout R, Denoue D, Barrioere Y, Lapierre C, Jouanin L Both caffeoyl Coenzyme A 3-O-methyltransferase 1 and caffeic acid O-methyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis. Planta. 2007 226 (5):1117-29 [PubMed]   [113] Desel C, Hubbermann EM, Schwarz K, Krupinska K Nitration of gamma-tocopherol in plant tissues. Planta. 2007 226 (5):1311-22 [PubMed]   [112] Frietsch S, Wang YF, Sladek C, Poulsen LR, Romanowsky SM, Schroeder JI, Harper JF A cyclic nucleotide-gated channel is essential for polarized tip growth of pollen. Proc Natl Acad Sci USA. 2007 104 (36):14531-6 [PubMed]   [111] Kliebenstein DJ, D'Auria JC, Behere AS, Kim JH, Gunderson KL, Breen JN, Lee G, Gershenzon J, Last RL, Jander G. Characterization of seed-specific benzoyloxyglucosinolate mutations in Arabidopsis thaliana. Plant J. 2007 51 (6):1062-1076 [PubMed] [GK-allele bzo1-gk] [GK-allele aae12-gk]   [110] Arnaud N, Ravet K, Borlotti A, Touraine B, Boucherez J, Fizames C, Briat JF, Cellier F, Gaymard F The iron-responsive element (IRE)/iron-regulatory protein 1 (IRP1)-cytosolic aconitase iron-regulatory switch does not operate in plants. Biochem J. 2007 405 (3):523-31 [PubMed]   [109] Waterworth WM, Altun C, Armstrong SJ, Roberts N, Dean PJ, Young K, Weil CF, Bray CM, West CE NBS1 is involved in DNA repair and plays a synergistic role with ATM in mediating meiotic homologous recombination in plants. Plant J. 2007 52 (1):41-52 [PubMed]   [108] Aronsson H, Boij P, Patel R, Wardle A, Toepel M, Jarvis P Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis thaliana. Plant J. 2007 52 (1):53-68 [PubMed]   [107] Barrero JM, Gonzoalez-Bayoon R, del Pozo JC, Ponce MR, Micol JL INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana. Plant Cell. 2007 19 (9):2822-38 [PubMed]   [106] Bird D, Beisson F, Brigham A, Shin J, Greer S, Jetter R, Kunst L, Wu X, Yephremov A, Samuels L Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion. Plant J. 2007 52 (3):485-98 [PubMed]   [105] Hartung F, Wurz-Wildersinn R, Fuchs J, Schubert I, Suer S, Puchta H The catalytically active tyrosine residues of both SPO11-1 and SPO11-2 are required for meiotic double-strand break induction in Arabidopsis. Plant Cell. 2007 19 (10):3090-9 [PubMed] [GK-allele spo11-2-3]   [104] Miya A, Albert P, Shinya T, Desaki Y, Ichimura K, Shirasu K, Narusaka Y, Kawakami N, Kaku H, Shibuya N CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis. Proc Natl Acad Sci USA. 2007 104 (49):19613-8 [PubMed]   [103] van Schie CC, Ament K, Schmidt A, Lange T, Haring MA, Schuurink RC Geranyl diphosphate synthase is required for biosynthesis of gibberellins. Plant J. 2007 52 (4):752-62 [PubMed]   [102] Hartung F, Suer S, Puchta H. Two closely related RecQ helicases have antagonistic roles in homologous recombination and DNA repair in Arabidopsis thaliana. Proc Natl Acad Sci USA. 2007 104 (47):18836-18841 [PubMed] [GK-allele recq4A-4] [GK-allele recq4B-1]   [101] Van Aken O, Pecenkovoa T, van de Cotte B, De Rycke R, Eeckhout D, Fromm H, De Jaeger G, Witters E, Beemster GT, Inzoe D, Van Breusegem F Mitochondrial type-I prohibitins of Arabidopsis thaliana are required for supporting proficient meristem development. Plant J. 2007 52 (5):850-64 [PubMed]   [100] Proveniers M, Rutjens B, Brand M, Smeekens S The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC. Plant J. 2007 52 (5):899-913 [PubMed]   [99] Lister R, Carrie C, Duncan O, Ho LH, Howell KA, Murcha MW, Whelan J Functional definition of outer membrane proteins involved in preprotein import into mitochondria. Plant Cell. 2007 19 (11):3739-59 [PubMed]   [98] Goh T, Uchida W, Arakawa S, Ito E, Dainobu T, Ebine K, Takeuchi M, Sato K, Ueda T, Nakano A VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana. Plant Cell. 2007 19 (11):3504-15 [PubMed]   [97] Noel LD, Cagna G, Stuttmann J, Wirthmoeller L, Betsuyaku S, Witte CP, Bhat R, Pochon N, Colby T, Parker JE. Interaction between SGT1 and Cytosolic/Nuclear HSC70 Chaperones Regulates Arabidopsis Immune Responses. Plant Cell. 2007 19 (12):4061-4076 [PubMed] [GK-allele hsc70-3;1] [GK-allele sgt1a-2]   [96] Glaring MA, Zygadlo A, Thorneycroft D, Schulz A, Smith SM, Blennow A, Baunsgaard L An extra-plastidial alpha-glucan, water dikinase from Arabidopsis phosphorylates amylopectin in vitro and is not necessary for transient starch degradation. J Exp Bot. 2007 58 (14):3949-60 [PubMed]   [95] Menand B, Yi K, Jouannic S, Hoffmann L, Ryan E, Linstead P, Schaefer DG, Dolan L. An ancient mechanism controls the development of cells with a rooting function in land plants. Science. 2007 316 (5830):1477-80 [PubMed] [GK-allele Atrhd6-3]   [94] Riefler M, Novak O, Strnad M, Schmulling T Arabidopsis Cytokinin Receptor Mutants Reveal Functions in Shoot Growth, Leaf Senescence, Seed Size, Germination, Root Development, and Cytokinin Metabolism. Plant Cell. 2006 18 (1):40-54 [PubMed]   [93] Hust B, Gutensohn M Deletion of core components of the plastid protein import machinery causes differential arrest of embryo development in Arabidopsis thaliana. Plant Biol. 2006 8 (1):18-30 [PubMed]   [92] Bolter B, Nada A, Fulgosi H, Soll J A chloroplastic inner envelope membrane protease is essential for plant development. FEBS Lett. 2006 580 (3):789-94 [PubMed]   [91] Lamkemeyer P, Laxa M, Collin V, Li W, Finkemeier I, Schottler MA, Holtkamp V, Tognetti VB, Issakidis-Bourguet E, Kandlbinder A, Weis E, Miginiac-Maslow M, Dietz KJ Peroxiredoxin Q of Arabidopsis thaliana is attached to the thylakoids and functions in context of photosynthesis. Plant J. 2006 45 (6):968-81 [PubMed]   [90] Bleeker PM, Hakvoort HW, Bliek M, Souer E, Schat H Enhanced arsenate reduction by a CDC25-like tyrosine phosphatase explains increased phytochelatin accumulation in arsenate-tolerant Holcus lanatus. Plant J. 2006 45 (6):917-29 [PubMed]   [89] Watanabe N, Lam E Arabidopsis Bax inhibitor-1 functions as an attenuator of biotic and abiotic types of cell death. Plant J. 2006 45 (6):884-94 [PubMed]   [88] Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci USA. 2006 103 (13):5012-7 [PubMed]   [87] Charng YY, Liu HC, Liu NY, Hsu FC, Ko SS Arabidopsis Hsa32, a novel heat-shock protein, is essential for acquired thermotolerance during long recovery after acclimation. Plant Physiol. 2006 140 (4):1297-305 [PubMed] [GK-allele hsa32-1]   [86] Dinneny JR, Weigel D, Yanofsky MF NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis. Development. 2006 133 (9):1645-55 [PubMed]   [85] Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis. Plant Cell. 2006 18 (5):1121-33 [PubMed]   [84] Delatte T, Umhang M, Trevisan M, Eicke S, Thorneycroft D, Smith SM, Zeeman SC Evidence for distinct mechanisms of starch granule breakdown in plants. J Biol Chem. 2006 281 (17):12050-9 [PubMed]   [83] Li J, Brader G, Kariola T, Palva ET WRKY70 modulates the selection of signaling pathways in plant defense. Plant J. 2006 46 (3):477-91 [PubMed]   [82] Adenot X, Elmayan T, Lauressergues D, Boutet S, Bouche N, Gasciolli V, Vaucheret H DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr Biol. 2006 16 (9):927-32 [PubMed]   [81] Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet. 2006 38 (6):721-5 [PubMed]   [80] Gotze TA, Philippar K, Ilkavets I, Soll J, Wagner R OEP37 is a new member of the chloroplast outer membrane ion channels. J Biol Chem. 2006 30;281 (26):17989-98 [PubMed]   [79] Collier S, Pendle A, Boudonck K, van Rij T, Dolan L, Shaw P A Distant Coilin Homologue Is Required for the Formation of Cajal Bodies in Arabidopsis. Mol Biol Cell. 2006 17 (7):2942-51 [PubMed]   [78] Raffaele S, Rivas S, Roby D An essential role for salicylic acid in AtMYB30-mediated control of the hypersensitive cell death program in Arabidopsis. FEBS Lett. 2006 580 (14):3498-504 [PubMed]   [77] Gan Y, Kumimoto R, Liu C, Ratcliffe O, Yu H, Broun P GLABROUS INFLORESCENCE STEMS modulates the regulation by gibberellins of epidermal differentiation and shoot maturation in Arabidopsis. Plant Cell. 2006 18 (6):1383-95 [PubMed]   [76] Lee CF, Pu HY, Wang LC, Sayler RJ, Yeh CH, Wu SJ Mutation in a homolog of yeast Vps53p accounts for the heat and osmotic hypersensitive phenotypes in Arabidopsis hit1-1 mutant. Planta. 2006 224 (2):330-8 [PubMed]   [75] Lariguet P, Schepens I, Hodgson D, Pedmale UV, Trevisan M, Kami C, de Carbonnel M, Alonso JM, Ecker JR, Liscum E, Fankhauser C PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism. Proc Natl Acad Sci USA. 2006 103 (26):10134-9 [PubMed]   [74] Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana. Plant J. 2006 47 (4):591-603 [PubMed]   [73] Rashotte AM, Mason MG, Hutchison CE, Ferreira FJ, Schaller GE, Kieber JJ A subset of Arabidopsis AP2 transcription factors mediates cytokinin responses in concert with a two-component pathway. Proc Natl Acad Sci USA. 2006 103 (29):11081-5 [PubMed]   [72] Fujisaki K, Ravelo GB, Naito S, Ishikawa M Involvement of THH1, an Arabidopsis thaliana homologue of the TOM1 gene, in tobamovirus multiplication. J Gen Virol. 2006 87 (8):2397-401 [PubMed]   [71] Wan XR, Li L Regulation of ABA level and water-stress tolerance of Arabidopsis by ectopic expression of a peanut 9-cis-epoxycarotenoid dioxygenase gene. Biochem Biophys Res Commun. 2006 347 (4):1030-8 [PubMed] [GK-allele nced3]   [70] Hurtado L, Farrona S, Reyes JC The putative SWI/SNF complex subunit BRAHMA activates flower homeotic genes in Arabidopsis thaliana. Plant Mol Biol. 2006 62 (1-2):291-304 [PubMed]   [69] del Pozo JC, Diaz-Trivino S, Cisneros N, Gutierrez C The balance between cell division and endoreplication depends on E2FC-DPB, transcription factors regulated by the ubiquitin-SCFSKP2A pathway in Arabidopsis. Plant Cell. 2006 18 (9):2224-35 [PubMed]   [68] Shimada T, Koumoto Y, Li L, Yamazaki M, Kondo M, Nishimura M, Hara-Nishimura I AtVPS29, a Putative Component of a Retromer Complex, is Required for the Efficient Sorting of Seed Storage Proteins. Plant Cell Physiol. 2006 47 (9):1187-94 [PubMed] [GK-allele mag1-2]   [67] Hartung F, Suer S, Bergmann T, Puchta H The role of AtMUS81 in DNA repair and its genetic interaction with the helicase AtRecQ4A. Nucleic Acids Res. 2006 34 (16):4438-48 [PubMed]   [66] Loschelder H, Schweer J, Link B, Link G Dual temporal role of plastid sigma factor 6 in Arabidopsis development. Plant Physiol. 2006 142 (2):642-50 [PubMed]   [65] Maurino VG, Grube E, Zielinski J, Schild A, Fischer K, Flugge UI Identification and Expression Analysis of Twelve Members of the Nucleobase-Ascorbate Transporter (NAT) Gene Family in Arabidopsis thaliana. Plant Cell Physiol. 2006 47 (10):1381-93 [PubMed]   [64] Schuster J, Knill T, Reichelt M, Gershenzon J, Binder S Branched-chain aminotransferase4 is part of the chain elongation pathway in the biosynthesis of methionine-derived glucosinolates in Arabidopsis. Plant Cell. 2006 18 (10):2664-79 [PubMed]   [63] Arnal N, Alban C, Quadrado M, Grandjean O, Mireau H The Arabidopsis Bio2 protein requires mitochondrial targeting for activity. Plant Mol Biol. 2006 62 (3):471-9 [PubMed] [GK-line 100C11]   [62] Zheng Z, Qamar SA, Chen Z, Mengiste T Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Plant J. 2006 48 (4):592-605 [PubMed]   [61] Ichimura K, Casais C, Peck SC, Shinozaki K, Shirasu K MEKK1 is required for MPK4 activation and regulates tissue-specific and temperature-dependent cell death in Arabidopsis. J Biol Chem. 2006 281 (48):36969-76 [PubMed] [GK-allele mekk1-2]   [60] Nikovics K, Blein T, Peaucelle A, Ishida T, Morin H, Aida M, Laufs P The Balance between the MIR164A and CUC2 Genes Controls Leaf Margin Serration in Arabidopsis. Plant Cell. 2006 18 (11):2929-45 [PubMed]   [59] Hibara K, Karim MR, Takada S, Taoka K, Furutani M, Aida M, Tasaka M Arabidopsis CUP-SHAPED COTYLEDON3 Regulates Postembryonic Shoot Meristem and Organ Boundary Formation. Plant Cell. 2006 18 (11):2946-57 [PubMed]   [58] Leshem Y, Melamed-Book N, Cagnac O, Ronen G, Nishri Y, Solomon M, Cohen G, Levine A Suppression of Arabidopsis vesicle-SNARE expression inhibited fusion of H2O2-containing vesicles with tonoplast and increased salt tolerance. Proc Natl Acad Sci USA. 2006 103 (47):18008-13 [PubMed]   [57] Journot-Catalino N, Somssich IE, Roby D, Kroj T The Transcription Factors WRKY11 and WRKY17 Act as Negative Regulators of Basal Resistance in Arabidopsis thaliana. Plant Cell. 2006 18 (11):3289-302 [PubMed]   [56] Drakakaki G, Zabotina O, Delgado I, Robert S, Keegstra K, Raikhel N Arabidopsis reversibly glycosylated polypeptides 1 and 2 are essential for pollen development. Plant Physiol. 2006 142 (4):1480-92 [PubMed]   [55] Sakuma Y, Maruyama K, Qin F, Osakabe Y, Shinozaki K, Yamaguchi-Shinozaki K Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression. Proc Natl Acad Sci USA. 2006 103 (49):18822-7 [PubMed]   [54] Schweer J, Loschelder H, Link G A promoter switch that can rescue a plant sigma factor mutant. FEBS Lett. 2006 580 (28-29):6617-22 [PubMed]   [53] Lohmann A, Schottler MA, Brehelin C, Kessler F, Bock R, Cahoon EB, Dormann P Deficiency in phylloquinone (vitamin K1) methylation affects prenyl quinone distribution, photosystem I abundance, and anthocyanin accumulation in the Arabidopsis AtmenG mutant. J Biol Chem. 2006 281 (52):40461-72 [PubMed]   [52] Barneche F, Winter V, Crevecoeur M, Rochaix JD ATAB2 is a novel factor in the signalling pathway of light-controlled synthesis of photosystem proteins. EMBO J. 2006 25 (24):5907-18 [PubMed]   [51] Titiz O, Tambasco-Studart M, Warzych E, Apel K, Amrhein N, Laloi C, Fitzpatrick TB PDX1 is essential for vitamin B6 biosynthesis, development and stress tolerance in Arabidopsis. Plant J. 2006 48 (6):933-46 [PubMed]   [50] Jaillais Y, Fobis-Loisy I, Mioege C, Rollin C, Gaude T AtSNX1 defines an endosome for auxin-carrier trafficking in Arabidopsis. Nature. 2006 443 (7107):106-9 [PubMed]   [49] Xu J, Yang JY, Niu QW, Chua NH Arabidopsis DCP2, DCP1, and VARICOSE Form a Decapping Complex Required for Postembryonic Development. Plant Cell. 2006 18 (12):3386-98 [PubMed]   [48] Griffiths J, Murase K, Rieu I, Zentella R, Zhang ZL, Powers SJ, Gong F, Phillips AL, Hedden P, Sun TP, Thomas SG Genetic Characterization and Functional Analysis of the GID1 Gibberellin Receptors in Arabidopsis. Plant Cell. 2006 18 (12):3399-414 [PubMed]   [47] Ingouff M, Jullien PE, Berger F The female gametophyte and the endosperm control cell proliferation and differentiation of the seed coat in Arabidopsis. Plant Cell. 2006 18 (12):3491-501 [PubMed]   [46] Wormit A, Trentmann O, Feifer I, Lohr C, Tjaden J, Meyer S, Schmidt U, Martinoia E, Neuhaus HE Molecular identification and physiological characterization of a novel monosaccharide transporter from Arabidopsis involved in vacuolar sugar transport. Plant Cell. 2006 18 (12):3476-90 [PubMed]   [45] Li L, Shimada T, Takahashi H, Ueda H, Fukao Y, Kondo M, Nishimura M, Hara-Nishimura I MAIGO2 Is Involved in Exit of Seed Storage Proteins from the Endoplasmic Reticulum in Arabidopsis thaliana. Plant Cell. 2006 18 (12):3535-47 [PubMed]   [44] Zaegel V, Guermann B, Le Ret M, Andres C, Meyer D, Erhardt M, Canaday J, Gualberto JM, Imbault P The Plant-Specific ssDNA Binding Protein OSB1 Is Involved in the Stoichiometric Transmission of Mitochondrial DNA in Arabidopsis. Plant Cell. 2006 18 (12):3548-63 [PubMed]   [43] Joshi V, Laubengayer KM, Schauer N, Fernie AR, Jander G Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool. Plant Cell. 2006 18 (12):3564-75 [PubMed]   [42] Vieira Dos Santos C, Cuiné S, Rouhier N and Rey P. The Arabidopsis plastidic methionine sulfoxide reductase B proteins. Sequence and activity characteristics, comparison of the expression with plastidic methionine sulfoxide reductase A, and induction by photooxidative stress. Plant Physiol. 2005 138 :909-922 [PubMed]   [41] Vlieghe K, Boudolf V, Beemster GT, Maes S, Magyar Z, Atanassova A, de Almeida Engler J, De Groodt R, Inze D, De Veylder L The DP-E2F-like Gene DEL1 Controls the Endocycle in Arabidopsis thaliana. Curr Biol. 2005 15 (1):59-63 [PubMed]   [40] Mills RF, Francini A, Ferreira da Rocha PS, Baccarini PJ, Aylett M, Krijger GC, Williams LE The plant P(1B)-type ATPase AtHMA4 transports Zn and Cd and plays a role in detoxification of transition metals supplied at elevated levels. FEBS Lett. 2005 579 (3):783-91 [PubMed]   [39] Rocha PS, Sheikh M, Melchiorre R, Fagard M, Boutet S, Loach R, Moffatt B, Wagner C, Vaucheret H, Furner I. The Arabidopsis HOMOLOGY-DEPENDENT GENE SILENCING1 Gene Codes for an S-Adenosyl-L-Homocysteine Hydrolase Required for DNA Methylation-Dependent Gene Silencing. Plant Cell. 2005 17 (2):404-417 [PubMed] [GK-allele sahh2-1]   [38] Finkemeier I, Goodman M, Lamkemeyer P, Kandlbinder A, Sweetlove LJ, Dietz KJ The Mitochondrial Type II Peroxiredoxin F Is Essential for Redox Homeostasis and Root Growth of Arabidopsis thaliana under Stress. J Biol Chem. 2005 280 (13):12168-80 [PubMed]   [37] Chalfun-Junior A, Franken J, Mes JJ, Marsch-Martinez N, Pereira A, Angenent GC ASYMMETRIC LEAVES2-LIKE1gene, a member of the AS2/LOB family, controls proximal-distal patterning in Arabidopsis petals. Plant Mol Biol. 2005 57 (4):559-75 [PubMed]   [36] Hanzawa Y, Money T, Bradley D A single amino acid converts a repressor to an activator of flowering. Proc Natl Acad Sci USA. 2005 102 (21):7748-53 [PubMed]   [35] Feechan A, Kwon E, Yun BW, Wang Y, Pallas JA, Loake GJ A central role for S-nitrosothiols in plant disease resistance. Proc Natl Acad Sci USA. 2005 102 (22):8054-59 [PubMed] [GK-allele gsnor1-3]   [34] Lid SE, Olsen L, Nestestog R, Aukerman M, Brown RC, Lemmon B, Mucha M, Opsahl-Sorteberg HG, Olsen OA Mutation in the Arabidopisis thaliana DEK1 calpain gene perturbs endosperm and embryo development while over-expression affects organ development globally. Planta. 2005 221 (3):339-51 [PubMed]   [33] Nawy T, Lee JY, Colinas J, Wang JY, Thongrod SC, Malamy JE, Birnbaum K, Benfey PN Transcriptional profile of the Arabidopsis root quiescent center. Plant Cell. 2005 17 (7):1908-25 [PubMed]   [32] Morita-Yamamuro C, Tsutsui T, Sato M, Yoshioka H, Tamaoki M, Ogawa D, Matsuura H, Yoshihara T, Ikeda A, Uyeda I, Yamaguchi J The Arabidopsis Gene CAD1 Controls Programmed Cell Death in the Plant Immune System and Encodes a Protein Containing a MACPF Domain. Plant Cell Physiol. 2005 46 (6):902-12 [PubMed]   [31] Andreasson E, Jenkins T, Brodersen P, Thorgrimsen S, Petersen NH, Zhu S, Qiu JL, Micheelsen P, Rocher A, Petersen M, Newman MA, Bjorn Nielsen H, Hirt H, Somssich I, Mattsson O, Mundy J The MAP kinase substrate MKS1 is a regulator of plant defense responses. EMBO J. 2005 24 (14):2579-89 [PubMed] [GK-allele w33]   [30] Thomann A, Brukhin V, Dieterle M, Gheyeselinck J, Vantard M, Grossniklaus U, Genschik P Arabidopsis CUL3A and CUL3B genes are essential for normal embryogenesis. Plant J. 2005 43 (3):437-48 [PubMed]   [29] Brembu T, Winge P, Bones AM The small GTPase AtRAC2/ROP7 is specifically expressed during late stages of xylem differentiation in Arabidopsis. J Exp Bot. 2005 56 (419):2465-76 [PubMed]   [28] Kubo M, Udagawa M, Nishikubo N, Horiguchi G, Yamaguchi M, Ito J, Mimura T, Fukuda H, Demura T Transcription switches for protoxylem and metaxylem vessel formation. Genes Dev. 2005 19 (16):1855-60 [PubMed]   [27] Xie Z, Allen E, Wilken A, Carrington JC DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci USA. 2005 102 (36):12984-9 [PubMed]   [26] Calderon-Villalobos LI, Kuhnle C, Dohmann EM, Li H, Bevan M, Schwechheimer C The Evolutionarily Conserved TOUGH Protein Is Required for Proper Development of Arabidopsis thaliana. Plant Cell. 2005 17 (9):2473-85 [PubMed]   [25] Huang T, Bohlenius H, Eriksson S, Parcy F, Nilsson O The mRNA of the Arabidopsis gene FT moves from leaf to shoot apex and induces flowering. Science. 2005 309 (5741):1694-6 [PubMed]   [24] Li J, Yang H, Peer WA, Richter G, Blakeslee J, Bandyopadhyay A, Titapiwantakun B, Undurraga S, Khodakovskaya M, Richards EL, Krizek B, Murphy AS, Gilroy S, Gaxiola R Arabidopsis H+-PPase AVP1 regulates auxin-mediated organ development. Science. 2005 310 (5745):121-5 [PubMed]   [23] Johnson KL, Degnan KA, Ross Walker J, Ingram GC AtDEK1 is essential for specification of embryonic epidermal cell fate. Plant J. 2005 44 (1):114-27 [PubMed]   [22] Yoo SK, Chung KS, Kim J, Lee JH, Hong SM, Yoo SJ, Yoo SY, Lee JS, Ahn JH. CONSTANS Activates SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 through FLOWERING LOCUS T to Promote Flowering in Arabidopsis. Plant Physiol. 2005 139 (2):770-778 [PubMed] [GK-allele ft-10]   [21] Masubelele NH, Dewitte W, Menges M, Maughan S, Collins C, Huntley R, Nieuwland J, Scofield S, Murray JA D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis. Proc Natl Acad Sci USA. 2005 102 (43):15694-9 [PubMed]   [20] Lipka V, Dittgen J, Bednarek P, Bhat R, Wiermer M, Stein M, Landtag J, Brandt W, Rosahl S, Scheel D, Llorente F, Molina A, Parker J, Somerville S, Schulze-Lefert P Pre- and postinvasion defenses both contribute to nonhost resistance in Arabidopsis. Science. 2005 310 (5751):1180-3 [PubMed]   [19] Berg M, Rogers R, Muralla R, Meinke D Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis. Plant J. 2005 44 (5):866-78 [PubMed]   [18] Wall MK, Mitchenall LA, Maxwell A Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria. Proc Natl Acad Sci USA. 2004 101 (20):7821-6 [PubMed]   [17] Ebel C, Mariconti L, Gruissem W Plant retinoblastoma homologues control nuclear proliferation in the female gametophyte. Nature. 2004 429 (6993):776-80 [PubMed]   [16] Feng S, Shen Y, Sullivan JA, Rubio V, Xiong Y, Sun TP, Deng XW Arabidopsis CAND1, an Unmodified CUL1-Interacting Protein, Is Involved in Multiple Developmental Pathways Controlled by Ubiquitin/Proteasome-Mediated Protein Degradation. Plant Cell. 2004 16 (7):1870-82 [PubMed]   [15] Lurin C, Andres C, Aubourg S, Bellaoui M, Bitton F, Bruyere C, Caboche M, Debast C, Gualberto J, Hoffmann B, Lecharny A, Ret ML, Martin-Magniette ML, Mireau H, Peeters N, Renou JP, Szurek B, Taconnat L, Small I Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis. Plant Cell. 2004 16 (8):2089-103 [PubMed]   [14] Kubis S, Patel R, Combe J, Bedard J, Kovacheva S, Lilley K, Biehl A, Leister D, Rios G, Koncz C, Jarvis P Functional Specialization amongst the Arabidopsis Toc159 Family of Chloroplast Protein Import Receptors. Plant Cell. 2004 16 (8):2059-77 [PubMed]   [13] Laubinger S, Fittinghoff K, Hoecker U The SPA Quartet: A Family of WD-Repeat Proteins with a Central Role in Suppression of Photomorphogenesis in Arabidopsis. Plant Cell. 2004 16 (9):2293-306 [PubMed]   [12] Lahmy S, Guilleminot J, Cheng CM, Bechtold N, Albert S, Pelletier G, Delseny M, Devic M DOMINO1, a member of a small plant-specific gene family, encodes a protein essential for nuclear and nucleolar functions. Plant J. 2004 39 (6):809-20 [PubMed]   [11] Zuther E, Buchel K, Hundertmark M, Stitt M, Hincha DK, Heyer AG The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Lett. 2004 576 (1-2):169-73 [PubMed]   [10] Ren S, Johnston JS, Shippen DE, McKnight TD TELOMERASE ACTIVATOR1 Induces Telomerase Activity and Potentiates Responses to Auxin in Arabidopsis. Plant Cell. 2004 16 (11):2910-22 [PubMed]   [9] Li Y, Sorefan K, Hemmann G, Bevan MW Arabidopsis NAP and PIR Regulate Actin-Based Cell Morphogenesis and Multiple Developmental Processes. Plant Physiol. 2004 136 (3):3616-27 [PubMed]   [8] Ha CM, Jun JH, Nam HG, Fletcher JC BLADE-ON-PETIOLE1 Encodes a BTB/POZ Domain Protein Required for Leaf Morphogenesis in Arabidopsis thaliana. Plant Cell Physiol. 2004 45 (10):1361-70 [PubMed]   [7] Saedler R, Zimmermann I, Mutondo M, Hulskamp M The Arabidopsis KLUNKER gene controls cell shape changes and encodes the AtSRA1 homolog. Plant Mol Biol. 2004 56 (5):775-82 [PubMed]   [6] Baba K, Schmidt J, Espinosa-Ruiz A, Villarejo A, Shiina T, Gardeström P, Sane AP, Bhalerao RP. Organellar gene transcription and early seedling development are affected in the rpoT;2 mutant of Arabidopsis. Plant J. 2004 38 (1):38-48 [PubMed] [GK-allele rpoT2-2]   [5] Stöckel J, Oelmüller R. A novel protein for photosystem I biogenesis. J Biol Chem. 2004 279 (11):10243-10251 [PubMed] [GK-allele hcf101-2]   [4] Fiers M, Hause G, Boutilier K, Casamitjana-Martinez E, Weijers D, Offringa R, van der Geest L, van Lookeren Campagne M, Liu CM. Mis-expression of the CLV3/ESR-like gene CLE19 in Arabidopsis leads to a consumption of root meristem. Gene. 2004 327 (1):37-49 [PubMed] [GK-allele cle19-gk]   [3] Sorensen AM, Krober S, Unte US, Huijser P, Dekker K and Saedler H. The Arabidopsis ABORTED MICROSPORES (AMS) gene encodes a MYC class transcription factor. Plant J. 2003 33 (2):413-423 [PubMed] [GK-allele ams1]   [2] Shimada T, Fuji K, Tamura K, Kondo M, Nishimura M, Hara-Nishimura I. Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana. Proc Natl Acad Sci USA. 2003 100 (26):16095-16100 [PubMed] [GK-allele atvsr1-2]   [1] Rogers EE and Guerinot ML. FRD3, a member of the multidrug and toxin efflux family, controls iron deficiency responses in Arabidopsis. Plant Cell. 2002 14 :1787-1799 [PubMed] [GK-allele FRD3]   Publications referring to the GABI-Kat population   [28] Kobercova E, Srba M, Fischer L. Sulfadiazine and phosphinothricin selection systems optimised for the transformation of tobacco BY-2 cells. Plant Cell Rep. 2023 [Epub ahead of print]. [PubMed] [Website]   [27] Shilo S, Tripathi P, Melamed-Bessudo C, Tzfadia O,, Muth TR, Levy AA. T-DNA-genome junctions form early after infection and are influenced by the chromatin state of the host genome. PLoS Genet. 2017 13 (7):e1006875 [PubMed]   [26] Linn J, Ren M, Berkowitz O, Ding W, van der Merwe MJ, Whelan J, Jost R. Root Cell-Specific Regulators of Phosphate-Dependent Growth. Plant Physiol. 2017 174 (3):1969-1989 [PubMed]   [25] Hassani-Pak K, Rawlings C. Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes. J Integr Bioinform. 2017 14 (1): [PubMed]   [24] Hily JM, Demanèche S, Poulicard N, Tannières M, Djennane S, Beuve M, Vigne E, Demangeat G, Komar V, Gertz C, Marmonier A, Hemmer C, Vigneron S, Marais A, Candresse T, Simonet P, Lemaire O. Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnol J. 2017 :epub ahead of print [PubMed]   [23] Wang D, Wang S, Chao J, Wu X, Sun Y, Li F, Lv J, Gao X, Liu G, Wang Y. Morphological phenotyping and genetic analyses of a new chemical-mutagenized population of tobacco (Nicotiana tabacum L.). Planta. 2017 246 (1):149-163 [PubMed]   [22] Pérez-Martín F, Yuste-Lisbona FJ, Pineda B, Angarita-Díaz MP, García-Sogo B, Antón T, Sánchez S, Giménez E, Atarés A, Fernández-Lozano A, Ortíz-Atienza A, García-Alcázar M, Castañeda L, Fonseca R, Capel C, Goergen G, Sánchez J, Quispe JL, Capel J, Angosto T, Moreno V, Lozano R. A collection of enhancer trap insertional mutants for functional genomics in tomato. Plant Biotechnol J. 2017 15 (11):1439-1452 [PubMed]   [21] Hu Y, Chen Z, Zhuang C, Huang J. Cascade of chromosomal rearrangements caused by a heterogeneous T-DNA integration supports the double-stranded break repair model for T-DNA integration. Plant J. 2017 90 (5):954-965 [PubMed]   [20] Li Y, Chen M, Shao N, Shan S, Xu C, Guo W, Wang C. Rapid and accurate early-stage detection of T-DNA/plant flanking sequences of resistant kumquats. Cell Tiss Organ Cult. 2017 129 (2):261–269 [Website]   [19] Eroglu S, Meier B, von Wirén N, Peiter E. The Vacuolar Manganese Transporter MTP8 Determines Tolerance to Iron Deficiency-Induced Chlorosis in Arabidopsis. Plant Physiol. 2016 170 (2):1030-45 [PubMed]   [18] Krishnakumar V, Contrino S, Cheng CY, Belyaeva I, Ferlanti ES, Miller JR, Vaughn MW, Micklem G, Town CD, Chan AP. ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery. Plant Cell Physiol. 2016 58 (1):e4 [PubMed]   [17] Tao JF, Zhou JZ, Xie T, Wang XT, Yang QY, Zhang HY. Influence of Chromatin 3D Organization on Structural Variations of the Arabidopsis thaliana Genome. Mol Plant. 2016 10 (2):340-344 [PubMed]   [16] van Kregten M, de Pater S, Romeijn R, van Schendel R, Hooykaas PJ, Tijsterman M. T-DNA integration in plants results from polymerase-θ-mediated DNA repair. Nat Plants. 2016 2 (11):16164 [PubMed]   [15] van Schendel R, van Heteren J, Welten R, Tijsterman M. Genomic Scars Generated by Polymerase Theta Reveal the Versatile Mechanism of Alternative End-Joining. PLoS Genet. 2016 12 (10):e1006368 [PubMed]   [14] Pucker B, Holtgräwe D, Rosleff Sörensen T, Stracke R, Viehöver P, Weisshaar B. A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PLoS ONE. 2016 11 (10):e0164321 [PubMed]   [13] Uçarlı C, Tufan F, Gürel F. Expression and genomic integration of transgenes after Agrobacterium-mediated transformation of mature barley embryos. Genet Mol Res. 2015 14 (1):1096-105 [PubMed]   [12] O'Malley RC, Barragan CC, Ecker JR. A user's guide to the Arabidopsis T-DNA insertion mutant collections. Methods Mol Biol. 2015 1284 :323-342 [PubMed]   [11] Jiang C, Chen C, Huang Z, Liu R, Verdier J. ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data. BMC Bioinformatics. 2015 16 (1):72 [PubMed]   [10] Berardini TZ, Reiser L, Li D, Mezheritsky Y, Muller R, Strait E, Huala E. The Arabidopsis information resource: Making and mining the *gold standard* annotated reference plant genome. Genesis. 2015 53 (8):474-485 [PubMed]   [9] Wu L, Di DW, Zhang D, Song B, Luo P and Guo GQ. Frequent problems and their resolutions by using thermal asymmetric interlaced PCR (TAIL-PCR) to clone genes in Arabidopsis T-DNA tagged mutants. Biotechnol Equip. 2015 29 (2):260-267 [PubMed]   [8] Lohscheider JN, Rojas-Stutz MC, Rothbart M, Andersson U, Funck D, Mendgen K, Grimm B and Adamska I. Altered levels of LIL3 isoforms in Arabidopsis lead to disturbed pigment-protein assembly and chlorophyll synthesis, chlorotic phenotype and impaired photosynthetic performance. Plant Cell Environ. 2015 38 (10):2115-2127 [PubMed]   [7] Li D, Dreher K, Knee E, Brkljacic J, Grotewold E, Berardini TZ, Lamesch P, Garcia-Hernandez M, Reiser L, Huala E. Arabidopsis database and stock resources. Methods Mol Biol. 2014 1062 :65-96 [PubMed]   [6] OMalley RC, Ecker JR. Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J. 2010 61 (6):928-940 [PubMed]   [5] Kuromori T, Takahashi S, Kondou Y, Shinozaki K and Matsui M. Phenome analysis in plant species using loss-of-function and gain-of-function mutants. Plant Cell Physiol. 2009 50 (7):1215-1231 [PubMed]   [4] Hily JM, Singer SD, Yang Y and Liu Z. A transformation booster sequence (TBS) from Petunia hybrida functions as an enhancer-blocking insulator in Arabidopsis thaliana. Plant Cell Rep. 2009 28 (7):1095-1104 [PubMed]   [3] Fu FF, Ye R, Xu SP and Xue HW. Studies on rice seed quality through analysis of a large-scale T-DNA insertion population. Cell Res. 2009 19 (3):380-391 [PubMed]   [2] Riaono-Pachoon DM, Nagel A, Neigenfind J, Wagner R, Basekow R, Weber E, Mueller-Roeber B, Diehl S, Kersten B. GabiPD: the GABI primary database--a plant integrative 'omics' database. Nucleic Acids Res. 2009 37 (Database issue):D954-D959 [PubMed]   [1] Peng ZY, Zhou X, Li L, Yu X, Li H, Jiang Z, Cao G, Bai M, Wang X, Jiang C, Lu H, Hou X, Qu L, Wang Z, Zuo J, Fu X, Su Z, Li S, Guo H. Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis. Nucleic Acids Res. 2009 37 (Database issue):D975-D982 [PubMed]   Publications referring to the GABI-Kat population and the DUPLO collection   [2] Gonzalez N and Inze D. Molecular systems governing leaf growth: from genes to networks. J Exp Bot. 2015 66 (4):1045-1054 [PubMed]   [1] Wilson-Sanchez D, Rubio-Diaz S, Munoz-Viana R, Perez-Perez JM, Jover-Gil S, Ponce MR and Micol JL. Leaf phenomics: a systematic reverse genetic screen for Arabidopsis leaf mutants. Plant J. 2014 79 (5):878-891 [PubMed]   Patents using GABI-Kat material   [3] Sazani P, Kole R. Multiple exon skipping compositions for DMD. 2016 [Espacenet]   [2] Wilton SD, Fletcher S, Mcclorey, G. Antisense oligonucleotides for inducing exon skipping and methods of use thereof. 2015 [Espacenet]   [1] Boerjan W, Vanholme R, Sundin L. Means and methods for altering the lignin pathway in plants. 2015 [Espacenet] [GK-allele 4cl2-3] [GK-allele ccoaom1-5] [GK-allele ccr1-6] [GK-allele pal2-3]